From ceb5def4d7aec02332f00c91cf3e2bced33f99ff Mon Sep 17 00:00:00 2001
From: Andrey Kislyuk <kislyuk@onyx.(none)>
Date: Tue, 27 Apr 2010 06:40:53 -0400
Subject: New package, ebuild written by me

---
 sci-libs/ghmm/Manifest         |  2 ++
 sci-libs/ghmm/ghmm-9999.ebuild | 38 ++++++++++++++++++++++++++++++++++++++
 sci-libs/ghmm/metadata.xml     |  9 +++++++++
 3 files changed, 49 insertions(+)
 create mode 100644 sci-libs/ghmm/Manifest
 create mode 100644 sci-libs/ghmm/ghmm-9999.ebuild
 create mode 100644 sci-libs/ghmm/metadata.xml

(limited to 'sci-libs')

diff --git a/sci-libs/ghmm/Manifest b/sci-libs/ghmm/Manifest
new file mode 100644
index 000000000..b9cca10ea
--- /dev/null
+++ b/sci-libs/ghmm/Manifest
@@ -0,0 +1,2 @@
+EBUILD ghmm-9999.ebuild 809 RMD160 2045e42f6055e65c7c753b8b7d2908fa16d732b7 SHA1 73415292cdd81653704ce0ffc9722b1dc80476ae SHA256 bb6cb98074623588ba6db9865c8d407019ace59bead6bfd770ca8687d1b9fef0
+MISC metadata.xml 255 RMD160 184656009858e0a39b1c4f42399521e4464049a8 SHA1 dbd3a562b7cd7911378771015534077fc39c9484 SHA256 cc428331a6ed09c67a36af65ea5b384cb839fc6d68beb1b6c53abd383916fc75
diff --git a/sci-libs/ghmm/ghmm-9999.ebuild b/sci-libs/ghmm/ghmm-9999.ebuild
new file mode 100644
index 000000000..514d454af
--- /dev/null
+++ b/sci-libs/ghmm/ghmm-9999.ebuild
@@ -0,0 +1,38 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mauvealigner/mauvealigner-9999.ebuild,v 1.1 2009/04/17 18:03:19 weaver Exp $
+
+EAPI="2"
+
+ESVN_REPO_URI="https://ghmm.svn.sourceforge.net/svnroot/ghmm/trunk/ghmm"
+
+inherit subversion
+
+DESCRIPTION="General Hidden Markov Model library - efficient data structures and algorithms for HMMs"
+HOMEPAGE="http://ghmm.sourceforge.net/"
+SRC_URI=""
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+IUSE=""
+KEYWORDS=""
+
+CDEPEND=""
+DEPEND="${CDEPEND}"
+RDEPEND="${CDEPEND}"
+
+S="${WORKDIR}/${PN}"
+
+src_prepare() {
+	./autogen.sh
+}
+
+src_configure() {
+	econf
+	# fixme: hack
+	sed -i 's|^prefix = \(.*\)|prefix = ${D}/usr|' {ghmmwrapper,HMMEd}/Makefile || die
+}
+
+src_install() {
+	einstall || die
+}
diff --git a/sci-libs/ghmm/metadata.xml b/sci-libs/ghmm/metadata.xml
new file mode 100644
index 000000000..7c2c6e6d8
--- /dev/null
+++ b/sci-libs/ghmm/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>weaver@gentoo.org</email>
+		<name>Andrey Kislyuk</name>
+	</maintainer>
+	<herd>science</herd>
+</pkgmetadata>
-- 
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