# This file is deprecated as per GLEP 56 in favor of metadata.xml. Please add # your descriptions to your package's metadata.xml ONLY. # * generated automatically using egencache * app-doc/root-docs:api - Generate html API documentation app-doc/root-docs:http - Build HttpServer documentation app-doc/root-docs:math - Provide all math related documentation app-doc/root-docs:metric - Default to A4 paper size and metric measurement. Letter will be used otherwise dev-cpp/eigen:adolc - Enable automatic differentiation using sci-libs/adolc dev-cpp/eigen:metis - Enable matrix partitioning using sci-libs/metis dev-cpp/eigen:mkl - Use propertary intel blas/lapack implementation through sci-libs/mkl dev-cpp/eigen:pastix - Enable large scale direct solver with using sci-libs/pastix dev-cpp/eigen:sparse - Enable use for extra sparse matrix with sci-libs/umfpack, sci-libs/cholmod, sci-libs/superlu and dev-cpp/sparsehash dev-java/hdf-java:hdf - Add support for the Hierarchical Data Format v.4 (sci-libs/hdf) dev-java/hdf-java:hdfview - Build a GUI viewer for all files supported in dev-java/hdf-java dev-java/jogl:cg - Enable NVidia Cg binding. dev-lang/berkeley_upc:mpi-compat - Enable interoperability with MPI dev-lang/berkeley_upc:pshm - Build UPC Runtime/GASNet with Process-SHared Memory enabled dev-lang/berkeley_upc:segment-fast - Select GASNet's FAST segments (default), for the fastest remote access with a possible cost in max shared memory size dev-lang/berkeley_upc:segment-large - Select GASNet's LARGE segments, for the largest possible shared memory size, at a possible cost in remote access time dev-lang/berkeley_upc:single - Support running over smp loopback (no network) dev-lang/berkeley_upc:sptr-packed - Use the more efficient 'packed' shared pointer representation dev-lang/berkeley_upc:sptr-struct - Use the 'struct' shared pointer representation dev-lang/berkeley_upc:sptr-symmetric - Enable 'symmetric' pointer variant where available (64-bit smp and shmem) dev-lang/berkeley_upc:udp - Support running over UDP dev-lang/conceptual:gui - Build the Java base graphical interface dev-lang/idb:eclipse - Install the dev-util/eclipse-sdk plugins dev-lang/path64:assembler - Build PathAS assembler dev-lang/path64:debugger - Build PathDB debugger dev-lang/path64:native - Use EKOPath/Path64 for bootstraping dev-lang/path64:valgrind - Support compiler debugging with dev-util/valgrind dev-lang/pgi:acml - Install AMD's core math library. dev-lang/pgi:cuda - Install PGI's CUDA components (e.g. for OpenACC) dev-lang/pgi:java - Install a PGI-tuned JRE. dev-libs/intel-common:compiler - Install the libraries needed for the icc and ifort compilers dev-libs/intel-common:mic - Install the libraries needed for supporting Intel Many Integrated Core (Xeon Phi) dev-libs/libflatarray:cuda - Enables plugins for NVIDIA GPUs (e.g. CUDAAllocator) dev-ml/mlgmpidl:mpfr - Add support for dev-libs/mpfr dev-python/ffnet:matplotlib - Use matplotlib for drawing dev-python/nbdime:webtools - Install web-based diff and merge tools. dev-python/pyhdf:szip - Allow to use sci-libs/szip for SZIP compression method in SDsetcompress() dev-tex/pythontex:highlighting - PLEASE FIX MY DESCRIPTION dev-util/VampirTrace:cuda - Enable tracing of CUDA calls and GPU kernels. dev-util/amdapp:examples - Build the OpenCL example programs dev-util/nvidia-cuda-gdk:healthmon - Install nvidia-healthmon. dev-util/nvidia-cuda-gdk:nvml - Install the NVIDIA Managment Library. dev-util/nvidia-cuda-gdk:nvvs - Install the NVIDIA Validation Suite. media-gfx/brlcad:benchmarks - Run benchmarks during test phase (need test option enabled) media-gfx/librecad:3d - Require all 2D coordinates stored as 3D media-gfx/librecad:tools - Build additional tool programs: tff2lff net-misc/cernbox-client:dolphin - Install the kde-apps/dolphin extension net-misc/cernbox-client:nautilus - Install the gnome-base/nautilus extension net-misc/cernbox-client:sftp - Enable sftp transfer support via net-libs/libssh sci-astronomy/mosstack:opencl - Enables OpenCL support and pulls in pyopencl. This makes some operations much faster but requires specific hardware and drivers. sci-astronomy/mosstack:qt4 - Pulls in PyQt4. Program works on command line interface without it but for GUI the library is required. sci-astronomy/psfex:plplot - Build with sci-libs/plplot to allow diagnostic plots during processing sci-astronomy/scamp:plplot - Build with sci-libs/plplot to allow diagnostic plots during processing sci-astronomy/sextractor:modelfit - Enable profile model fitting, needs sci-libs/atlas and sci-libs/fftw sci-astronomy/zpeg:gdl - Install GDL/IDL plotting routines sci-biology/bru2nii:gui - Build graphical user interface sci-biology/discrover:cairo - Use Cairo for sequence logo plotting capabilities sci-biology/discrover:dreme - Enable usage of DREME from the MEME package for seeding sci-biology/discrover:lto - Compile with link-time optimization (LTO) sci-biology/discrover:misc_scripts - Install miscellaneous scripts sci-biology/discrover:rmathlib - Link to the standalone Rmathlib for statistical routines sci-biology/estscan:icc - Undocumented USE sci-biology/estscan:ifc - Undocumented USE sci-biology/exonerate-gff3:utils - Unknown sci-biology/imagej:plugins - Install additional plugins sci-biology/ncbi-blast+:boost - Undocumented USE sci-biology/ncbi-blast+:cppunit - Undocumented USE sci-biology/ncbi-blast+:freetype - Undocumented USE sci-biology/ncbi-blast+:mesa - Undocumented USE sci-biology/ncbi-blast+:muparser - Undocumented USE sci-biology/ncbi-blast+:sablotron - Undocumented USE sci-biology/ncbi-blast+:xalan - Undocumented USE sci-biology/ncbi-blast+:xerces - Undocumented USE sci-biology/ncbi-blast+:xslt - Undocumented USE sci-biology/ncbi-tools++:boost - Undocumented USE sci-biology/ncbi-tools++:cppunit - Undocumented USE sci-biology/ncbi-tools++:freetype - Undocumented USE sci-biology/ncbi-tools++:mesa - Undocumented USE sci-biology/ncbi-tools++:muparser - Undocumented USE sci-biology/ncbi-tools++:sablotron - Undocumented USE sci-biology/ncbi-tools++:xalan - Undocumented USE sci-biology/ncbi-tools++:xerces - Undocumented USE sci-biology/ncbi-tools++:xslt - Undocumented USE sci-biology/nilearn:plot - Adds optional dependency needed for plotting function subset. sci-biology/sga:jemalloc - Use dev-libs/jemalloc sci-chemistry/ball:cuda - Include cuda support sci-chemistry/ball:sql - Include SQL database support sci-chemistry/ball:webkit - Uses dev-qt/qt-webkit for drawing sci-chemistry/gamess:neo - Enable NEO for nuclear basis support sci-chemistry/gamess:pax_kernel - Make this package work on PAX kernels sci-chemistry/gamess:qmmm-tinker - Enable tinker qmmm code sci-chemistry/gnome-chemistry-utils:gnumeric - Build pluging for gnumeric sci-chemistry/mdsctk:R - Install dev-lang/R scripts as well sci-chemistry/nwchem:blas - Use external BLAS library instead of the internal routines sci-chemistry/nwchem:cuda - Enable CUDA GPU support for the Tensor Contraction Engine generated methods (CI, MBPT, CC) sci-chemistry/nwchem:int64 - Use 64 bits integers sci-chemistry/nwchem:lapack - Use external LAPACK library instead of the internal routines sci-chemistry/nwchem:mrcc - Compile the routines for Multi Reference Coupled Clusters theory sci-chemistry/nwchem:nwchem-tests - Install qa tests data sci-chemistry/nwchem:scalapack - Use external SCALAPACK library sci-chemistry/openbabel:doc - Install API dicumentation. sci-chemistry/openbabel:java - Install Java bindings. sci-chemistry/openbabel:openmp - Enable parallelization using OpenMP. sci-chemistry/openbabel:perl - Install Perl bindings. sci-chemistry/openbabel:python - Install Python bindings and PyBel. sci-chemistry/openbabel:ruby - Install Ruby bindings. sci-chemistry/openbabel:wxwidgets - Build Open Babel GUI. sci-chemistry/pymol:web - Install Pymodule needed for web app support sci-chemistry/rosetta:boinc - compile rosetta as a rosetta@home client sci-chemistry/rosetta:boost - compile rosetta with boost supported code sci-chemistry/rosetta:float - Build with floats rather than doubles sci-chemistry/rosetta:lange - Apply patches from www.csrosetta.org sci-chemistry/shiftx2:debug - Enables debug output in the shiftx2 java part sci-chemistry/wxmacmolplt:flash - Add support for flash movie generation using media-libs/ming sci-electronics/player:boost - Automatically generated description for boost sci-electronics/player:festival - Automatically generated description for festival sci-electronics/player:openssl - Automatically generated description for openssl sci-electronics/player:sphinx2 - Automatically generated description for sphinx2 sci-geosciences/qgis:grass - Add support for sci-geosciences/grass sci-libs/acml:gfortran - Fetch and install acml compiled with GNU FORTRAN compiler sci-libs/acml:ifort - Fetch and install acml compiled with the Intel FORTRAN compiler sci-libs/acml:int64 - Install the 64 bits integer library sci-libs/acml:open64 - Fetch and install acml compiled with the Open64 FORTRAN Compiler sci-libs/acml:pgi - Fetch and install acml compiled with the Portland Group FORTRAN compiler sci-libs/armadillo:arpack - Link with sci-libs/arpack libraries for eigen decomposition sci-libs/armadillo:atlas - Link with sci-libs/atlas libraries for cblas and clapack sci-libs/armadillo:mkl - Use matrix allocation from the Intel MKL sci-libs/mkl sci-libs/armadillo:superlu - Use SuperLU for sparse linear equation solving sci-libs/superlu sci-libs/armadillo:tbb - Use matrix allocation from the Threads Building Blocks dev-cpp/tbb sci-libs/arrayfire:cpu - Build CPU backend. sci-libs/arrayfire:cuda - Build CUDA backend. sci-libs/arrayfire:graphics - Build with Forge graphics. sci-libs/arrayfire:nonfree - Build ArrayFire nonfree algorithms. sci-libs/arrayfire:opencl - Build OpenCL backend. sci-libs/arrayfire:unified - Build Backend-Independent API. sci-libs/asl:matlab - Matlab support with sci-libs/matio sci-libs/atlas:deprecated - Build deprecated routines sci-libs/atlas:generic - Build atlas assuming a fairly generic architecture (sse2 for x86, core2 for amd64) sci-libs/atlas:ifko - Use iFKO to improve ATLAS performance (ATTENTION!!! Increases builtime enormously) sci-libs/bigdft-abi:cuda - Enable support for nVidia CUDA sci-libs/bigdft-abi:etsf_io - Enable support for reading and writing the European Theoretical Spectroscopy facility (ETSF) file format sci-libs/bigdft-abi:glib - Compile with GLib Object System support sci-libs/bigdft-abi:opencl - Enable support for OpenCL GPU acceleration sci-libs/bigdft-abi:scalapack - Use ScaLAPACK, a subset of LAPACK routines redesigned for heterogenous computing sci-libs/blas-reference:int64 - Build the 64 bits integer library sci-libs/calculix-ccx:arpack - Add sparse eigen value support via sci-libs/arpack sci-libs/cblas-reference:int64 - Build the 64 bits integer library sci-libs/clblas:client - Build a command line clBLAS client program. sci-libs/clblas:ktest - A command line tool for testing single clBLAS kernel. sci-libs/clblas:performance - Copy performance scripts that can measure and graph performance. sci-libs/clfft:callback_client - Build a command line clFFT client program that tests callback functionality. sci-libs/clfft:client - Build a command line clFFT client program. sci-libs/clrng:client - Build a command line clRNG client program. sci-libs/dealii:arpack - Adds support for ARPACK (sci-libs/arpack) sci-libs/dealii:c++11 - Compile the library with -std=c++11 sci-libs/dealii:debug - Build an additional debug library with extra debug codepaths, like asserts and extra output. If you want to get meaningful backtraces see sci-libs/dealii:mesh_converter - Build and install the mesh_converter executable sci-libs/dealii:metis - Add support for metis (sci-libs/metis) sci-libs/dealii:mumps - Add support for mumps (sci-libs/mumps) sci-libs/dealii:muparser - Add support for muparser (dev-cpp/muParser) sci-libs/dealii:opencascade - Add support for opencascade (sci-libs/opencascade) sci-libs/dealii:p4est - Add support for p4est (sci-mathematics/p4est) sci-libs/dealii:parameter_gui - Build and install the parameter_gui executable sci-libs/dealii:petsc - Add support for petsc (sci-libs/petsc) sci-libs/dealii:sparse - Add support for suitesparse (sci-libs/suitesparse) sci-libs/dealii:tbb - Add threading support with the help of the tbb library (dev-cpp/tbb) sci-libs/dealii:trilinos - Add support for trilinos (sci-libs/trilinos) sci-libs/etsf_io:pic - Compile Position Independent Code sci-libs/factory:singular - Enable support for sci-mathematics/singular sci-libs/fox:dom - Compile the W3C document object model module sci-libs/fox:fast - Compile with best known optimization flags sci-libs/fox:sax - Compile the streaming, validating parser based on java's Simple API for XML sci-libs/fox:wcml - Compile the module for a subset of the Chemical Markup Language sci-libs/fox:wkml - Compile the module for the creation of KML documents used by applications such as Google Earth sci-libs/fox:wxml - Compile the XML writer used to sequentially create arbitrary XML documents quickly with minimal memory requirements sci-libs/gmsh:cgns - Enables cgns output support sci-libs/gmsh:chaco - Enables chaco partitioner support sci-libs/gmsh:med - Enables med support sci-libs/gmsh:metis - Enables metis support sci-libs/gmsh:netgen - Enable 3D Frontal triangulation using netgen lib sci-libs/gmsh:opencascade - Enable OpenCASCADE support sci-libs/gmsh:petsc - Enable sci-mathematics/petsc support sci-libs/gmsh:taucs - Enable sci-libs/taucs support sci-libs/gmsh:tetgen - Enable 3D delauny triangulation using tetgen lib sci-libs/gotoblas2:incblas - Build the CBLAS interface sci-libs/gotoblas2:int64 - Build the 64 bits integer library sci-libs/gsl:cblas-external - Link gsl with external cblas provided by (virtual/cblas) instead of shipped internal version sci-libs/itk:itkv3compat - Enable compatibility with ITK version 3 sci-libs/itk:review - Enable compilation of methods under review sci-libs/itk:vtkglue - PLEASE FIX MY DESCRIPTION sci-libs/lapack-reference:deprecated - Build deprecated routines sci-libs/lapack-reference:int64 - Build the 64 bits integer library sci-libs/lapack-reference:xblas - Build LAPACK with extra precision (needs sci-libs/xblas) sci-libs/lapacke-reference:deprecated - Build deprecated routines sci-libs/lapacke-reference:tmg - Build LAPACKE with a Test Matrix Generator library sci-libs/lapacke-reference:xblas - Build LAPACKE with extra precision (needs sci-libs/xblas) sci-libs/libfac:singular - Automatically generated description for singular sci-libs/libgeodecomp:cuda - Enables plugins for NVIDIA GPUs (e.g. CUDASimulator and CUDAStepper) sci-libs/libgeodecomp:hpx - Activates the HPX backend as an alternative to the usual MPI backends. sci-libs/libgeodecomp:opencl - Builds those plugins which can offload to OpenCL devices. sci-libs/libgeodecomp:opencv - Some input components can read from cameras etc. via OpenCV sci-libs/libgeodecomp:qt4 - Adds the QTWidgetWriter, which allows in situ visualization of a running simulation. sci-libs/libgeodecomp:scotch - Optinally use Scotch for domain decomposition. sci-libs/libgeodecomp:visit - Add in situ visualization for big simulations via VisIt. sci-libs/libsc:romio - Build with support for the ROMIO MPI-IO component sci-libs/lwpr:octave - Add sci-mathematics/octave support sci-libs/mkl:int64 - Build the 64 bits integer library sci-libs/mkl:mic - Install the libraries needed for supporting Intel Many Integrated Core (Xeon Phi) sci-libs/nexus:doc - Generate library documentation with app-doc/doxygen sci-libs/nexus:fortran - Build the Fortran bindings sci-libs/nexus:hdf4 - Support the old HDF4 representation sci-libs/nexus:hdf5 - Support the standard representation (HDF5) sci-libs/nexus:java - Build the Java bindings sci-libs/nexus:utils - Build optional utility applications sci-libs/nexus:xml - Allow using the verbose XML representation of NeXus data sci-libs/nibabel:dicom - Adds limited read support for the DICOM imaging format. sci-libs/oasa:cairo - Add support for Cairo graphics library using dev-python/pycairo sci-libs/openblas:dynamic - Build dynamic architecture detection at run time (for multi targets) sci-libs/openblas:int64 - Build the 64 bits integer library sci-libs/p4est:romio - Build with support for the ROMIO MPI-IO component sci-libs/p4est:vtk-binary - Enable binary vtk output. If disabled vtk files will be written in ASCII text format. sci-libs/pagmo:kepler - Automatically generated description for kepler sci-libs/pagmo:nlopt - Automatically generated description for nlopt sci-libs/parmetis:double-precision - Floating-point operation done as double precision sci-libs/parmetis:int64 - Build the 64 bits integer library (needed for > 2^31 vertices) sci-libs/scikits_image:freeimage - Enable support for image i/o via media-libs/freeimage sci-libs/scikits_image:pyamg - Enable support for algebraic solvers via dev-python/pyamg sci-libs/symengine:boost - Add support for boost (dev-libs/boost) sci-libs/trilinos:adolc - Add support for adolc (sci-libs/adolc) sci-libs/trilinos:arprec - Add support for arprec (sci-libs/arprec) sci-libs/trilinos:boost - Add support for boost (dev-libs/boost) sci-libs/trilinos:clp - Add support for clp (sci-libs/coinor-clp) sci-libs/trilinos:cppunit - Add support for (...) sci-libs/trilinos:cuda - Add support for cuda (dev-util/nvidia-cuda-toolkit) sci-libs/trilinos:eigen - Add support for eigen (dev-cpp/eigen) sci-libs/trilinos:glpk - Add support for (...) sci-libs/trilinos:gtest - Add support for gtest (dev-cpp/gtest) sci-libs/trilinos:hdf5 - Add support for hdf5 (sci-libs/hdf5) sci-libs/trilinos:hwloc - Add support for hwloc (sys-apps/hwloc) sci-libs/trilinos:hypre - Add support for hypre (sci-libs/hypre) sci-libs/trilinos:matio - Add support for matio (sci-libs/matio) sci-libs/trilinos:metis - Add support for metis (sci-libs/metis or sci-libs/parmetis) sci-libs/trilinos:mkl - Add support for mkl (sci-libs/mkl) sci-libs/trilinos:mumps - Add support for mumps (sci-libs/mumps) sci-libs/trilinos:netcdf - Add support for netcdf (sci-libs/netcdf) sci-libs/trilinos:petsc - Add support for petsc (sci-mathematics/petsc) sci-libs/trilinos:qd - Add support for qd (sci-libs/qd) sci-libs/trilinos:scalapack - Add support for scalapack (virtual/scalapack) sci-libs/trilinos:scotch - Add support for scotch (sci-libs/scotch) sci-libs/trilinos:sparse - Add support for sparse matrix solvers (sci-libs/umfpack) sci-libs/trilinos:superlu - Add support for superlu (sci-libs/superlu) sci-libs/trilinos:taucs - Add support for taucs (sci-libs/taucs) sci-libs/trilinos:tbb - Add support for threading building blocks library (dev-cpp/tbb) sci-libs/trilinos:tvmet - Add support for tvmet (dev-libs/tvmet) sci-libs/trilinos:yaml - Add support for yaml (dev-cpp/yaml) sci-libs/xblas:int64 - Build the 64 bits integer library sci-mathematics/Macaulay2:optimization - Disable to build with -O0 for debugging. sci-mathematics/acl2:books - build community books, the canonical collection of open-source libraries sci-mathematics/dolfin:cgal - Adds support for geometric algorithms with sci-mathematics/cgal sci-mathematics/dolfin:cholmod - Adds support for sparse Cholesky factorization with sci-libs/cholmod sci-mathematics/dolfin:hdf5 - Adds support for sci-libs/hdf5 sci-mathematics/dolfin:parmetis - Adds support for parallel graph partitioning with sci-libs/parmetis sci-mathematics/dolfin:petsc - Adds support for numerical linear algebra toolkit sci-mathematics/petsc sci-mathematics/dolfin:scotch - Adds support for graph partitioning with sci-libs/scotch sci-mathematics/dolfin:trilinos - Adds support for numerical linear algebra toolkit sci-libs/trilinos sci-mathematics/dolfin:umfpack - Adds support for sparse solving with sci-libs/umfpack sci-mathematics/dolfin:vtk - Adds support for the visualization toolkit sci-libs/vtk sci-mathematics/gambit:X - Enable gui support using wxWidgets. sci-mathematics/gap:xtom - Automatically generated description for xtom sci-mathematics/gismo:doc - Build doxygen-documentation sci-mathematics/gismo:examples - Build examples sci-mathematics/gismo:vtk - Build plug-in for sci-mathematics/axel-vtkview sci-mathematics/htk:hdecode - Install HDecode, a large vocabulary word recogniser sci-mathematics/htk:hlmtools - Install the tools for manipulation of language models sci-mathematics/htk:hslab - Install HSLab a label editor for speech label manipulation sci-mathematics/htk:htkbook - Build the HTK documentation (HTK Book) sci-mathematics/netgen:opencascade - Enable OpenCASCADE support sci-mathematics/petsc:afterimage - Use Afterstep image library (media-libs/libafterimage) sci-mathematics/petsc:boost - Use boost (dev-libs/boost) sci-mathematics/petsc:complex-scalars - Make scalars complex sci-mathematics/petsc:hypre - Use HYPRE (sci-mathematics/hypre) and for preconditioning sci-mathematics/petsc:mumps - PLEASE FIX MY DESCRIPTION sci-mathematics/petsc:scotch - PLEASE FIX MY DESCRIPTION sci-mathematics/petsc:sparse - Use suitesparse (sci-libs/suitesparse) including cholmod (sci-libs/cholmod) for sparse factorization sci-mathematics/petsc:superlu - Use superlu (sci-libs/superlu) for preconditioning sci-mathematics/scilab:emf - Add suport for exporting to emf files sci-mathematics/scilab:gui - Build the Java base graphical interface sci-mathematics/scilab:matio - Enable support for MATLAB file through sci-libs/matio sci-mathematics/scilab:umfpack - Adds support for sparse solving with sci-libs/umfpack sci-mathematics/scilab:xcos - Enable building hybrid dynamic systems modeler and simulator Xcos sci-mathematics/why:apron - Use sci-mathematics/apron library for abstract interpretation sci-mathematics/why:coq - Add sci-mathematics/coq support sci-mathematics/why:float - Add sci-mathematics/flocq support sci-mathematics/why:frama-c - Add sci-mathematics/frama-c support sci-mathematics/why:gappa - Add sci-mathematics/gappalib-coq support sci-mathematics/why:pff - Add sci-mathematics/pff support sci-mathematics/why:why3 - Add sci-mathematics/why3 support sci-mathematics/why3:float - Add sci-mathematics/flocq support sci-mathematics/why3:frama-c - Enable Frama-C plugin sci-misc/elmer-gui:bundled_netgen - Use bundled version of sci-mathematics/netgen sci-misc/elmer-gui:matc - Enables sci-libs/matc support sci-misc/elmer-gui:opencascade - Enable sci-libs/opencascade support sci-misc/elmer-gui:qwt - Enables x11-libs/qwt support sci-misc/elmer-gui:vtk - Enables sci-libs/vtk support sci-misc/hfst:foma - Add optional support for foma backend library (sci-misc/foma) sci-misc/hfst:glib - Parse UTF-8 and collate unicode using glib instead of homebrewn methods sci-misc/hfst:openfst - Add optional support for openfst backend library (sci-misc/openfst) sci-misc/hfst:sfst - Add optional support for sfst backend library (sci-misc/sfst) sci-misc/hfst:xml - Include parsers for grammars and formats that require XML support sci-misc/kaldi:cuda - Build with CUDA support. sci-misc/kaldi:double-precision - Build in double precision mode. sci-physics/abinit:atompaw - Enable support for atompaw, a Projector Augmented Waves atomic data generator sci-physics/abinit:bigdft - Enable support for BigDFT, DFT package using wavelet basis set sci-physics/abinit:cuda - Enable support for nVidia CUDA sci-physics/abinit:cuda-double - Enable support for double precision nVidia CUDA sci-physics/abinit:etsf_io - Enable support for reading and writing the European Theoretical Spectroscopy facility (ETSF) file format. sci-physics/abinit:fftw-mpi - Use the MPI version of sci-libs/fftw (always with either openMP or pthreads too) sci-physics/abinit:fftw-threads - Use the threaded (openMP or pthreads) version of sci-libs/fftw sci-physics/abinit:fox - Enable support for FoX Fortran XML library sci-physics/abinit:levmar - Enable support for sci-libs/levmar, the Levenberg-Marquardt least-squares optimisation sci-physics/abinit:libabinit - Build the libabinit used by sci-libs/bigdft (usage not tested yet, circular dependency not resolved) sci-physics/abinit:libxc - Enable support for libxc, an exchange-correlation potentials library sci-physics/abinit:lotf - Activate the Learn on The Fly method (LOTF) for Molecular Dynamics sci-physics/abinit:scalapack - Use ScaLAPACK, a subset of LAPACK routines redesigned for heterogenous computing sci-physics/abinit:scripts - Install helper scripts, mostly Python sci-physics/abinit:vdwxc - Activate van der Waals exchange-correlation correction. Since 7.4.0 no longer optional sci-physics/abinit:wannier - Enable support for wannier90, a maximally localized Wannier functions (MLWFs) calculator sci-physics/atompaw:libxc - Enable support for libxc, an exchange-correlation potentials library sci-physics/atompaw:longplot - Patch the sources to plot functions all over the space considered, not just up to the matching radius plus 50 grid points. May be useless or even harmful. sci-physics/bigdft:cuda - Enable support for nVidia CUDA GPU acceleration sci-physics/bigdft:etsf_io - Enable support for reading and writing the European Theoretical Spectroscopy facility (ETSF) file format. sci-physics/bigdft:glib - Compile with GLib Object System support sci-physics/bigdft:opencl - Enable support for OpenCL GPU acceleration sci-physics/bigdft:scalapack - Use ScaLAPACK, a subset of LAPACK routines redesigned for heterogenous computing sci-physics/elk:libxc - Use sci-libs/libxc library of exchange-correlation functionals by ETSF. sci-physics/elk:perl - Install perl scripts. sci-physics/elk:python - Install python scripts. sci-physics/geant-vmc:g4root - Build G4Root (interface for GEANT4 simulation with a ROOT geometry) sci-physics/geant-vmc:geant3 - Build with Geant4 G3toG4 library sci-physics/geant-vmc:mtroot - Build MTRoot (provides ROOT IO manager classes with multi-threading support) sci-physics/geant-vmc:vgm - Enable the Virtual Geometry Model (sci-physics/vgm) sci-physics/mc-tester:hepmc - Compile sci-physics/hepmc interface sci-physics/root:fits - Support for images and data from FITS files with sci-libs/cfitsio sci-physics/root:geocad - Enable ROOT-CAD interface using sci-libs/opencascade sci-physics/root:http - Enable http server support including but not limited to fastcgi support sci-physics/root:math - Build all math related libraries plugins, needs sci-libs/gsl sci-physics/root:pythia6 - Build the interface for sci-physics/pythia version 6.x sci-physics/root:pythia8 - Build the interface for sci-physics/pythia version 8.x sci-physics/root:xrootd - Build the interface for net-libs/xrootd sci-physics/tauola:hepmc - Compile sci-physics/hepmc interface sci-physics/tauola:tau-spinner - Compile with TauSpinner library sci-physics/vgm:geant4 - Enable interaction with Geant4(sci-physics/geant:4) sci-physics/vgm:root - Enable interactions with ROOT (sci-physics/root) sci-visualization/mantid:doc - Generate documentation with app-doc/doxygen, QT Assistant etc sci-visualization/mantid:opencascade - Use OpenCascade to show 3D models of instruments sci-visualization/mantid:opencl - Use OpenCL to accelerate calculations sci-visualization/mantid:paraview - Enable the Visualisation and Analysis Toolkit ExtensionS (VATES) sci-visualization/mantid:tcmalloc - Use thread-caching malloc sci-visualization/nodemon:pbs - Enable support for the Portable Batch System. sci-visualization/v_sim:abinit - Add support for ABINIT file formats sci-physics/abinit sci-visualization/v_sim:cube - Add support plug-in support for Cube files (densities and structures) sci-visualization/v_sim:openbabel - Add support for ABINIT file formats sci-chemistry/openbabel sci-visualization/v_sim:xsf - plug-in support for files that follow the XCrysDen format for structural positions and densities sys-cluster/htcondor:X - Enable the HTCondor Keyboard Daemon to monitor logged in X users for activity sys-cluster/htcondor:boinc - Enable backfill with BOINC jobs when the cluster is not being used sys-cluster/htcondor:cgroup - Use dev-libs/libcgroup for kernel control groups sys-cluster/htcondor:contrib - Build contrib modules sys-cluster/htcondor:dmtcp - Use sys-apps/dmtcp for checkpointing sys-cluster/htcondor:libvirt - Use app-emulation/libvirt for virtualisation sys-cluster/htcondor:management - Use net-libs/qmf for management sys-cluster/htcondor:minimal - Don't support standard universe jobs sys-cluster/lustre:client - Enable kernel client modules sys-cluster/lustre:dlc - Enable Dynamic LNET Configuration sys-cluster/lustre:server - Enable kernels server modules sys-cluster/lustre:tests - Enable installation of tests sys-cluster/lustre:utils - Enable lustre utils sys-cluster/mpich:mpi-threads - Enable MPI_THREAD_MULTIPLE sys-cluster/mpich:romio - Build the ROMIO MPI-IO component sys-cluster/mpich2:mpi-threads - Enable MPI_THREAD_MULTIPLE sys-cluster/mpich2:romio - Build the ROMIO MPI-IO component sys-cluster/mvapich2:large-cluster - Automatically generated description for large-cluster sys-cluster/mvapich2:medium-cluster - Automatically generated description for medium-cluster sys-cluster/mvapich2:romio - Automatically generated description for romio sys-cluster/openmpi:cma - Enable the CMA (Cross Memory Attach) MCA sys-cluster/openmpi:cuda - Add GPU direct support sys-cluster/openmpi:heterogeneous - Enable features required for heterogeneous platform support sys-cluster/openmpi:mpi-threads - Enable MPI_THREAD_MULTIPLE sys-cluster/openmpi:numa - Enable numactl to allow binding processes to CPUs sys-cluster/openmpi:romio - Build the ROMIO MPI-IO component sys-cluster/openmpi:vt - Enable bundled VampirTrace support virtual/blacs:int64 - Add eselect module for blas libraries built with 64 bits integer ABI virtual/blas:int64 - Add eselect module for blas libraries built with 64 bits integer ABI virtual/cblas:int64 - Add eselect module for cblas libraries built with 64 bits integer ABI virtual/lapack:int64 - Add eselect module for lapack libraries built with 64 bits integer ABI virtual/lapacke:int64 - Add eselect module for blas libraries built with 64 bits integer ABI virtual/scalapack:int64 - Add eselect module for blas libraries built with 64 bits integer ABI x11-libs/agg:gpc - Enable gpc polygon clipper library