--- Makefile.ori	2018-04-21 17:47:38.017147315 +0200
+++ Makefile	2018-04-21 17:48:29.038679685 +0200
@@ -2,14 +2,14 @@
 CXXFLAGS= -O2 -pipe -mpclmul -mpopcnt -march=native -ftree-vectorize -std=c++0x
 LINKFLAGS = -I . -lpthread -lz 
 DEBUG=
-jellyfishPath = `which jellyfish`
-jellyfishVersion = `jellyfish --version | cut -f2 -d' ' | cut -f1 -d'.'`
+jellyfishPath = `which jellyfish2`
+jellyfishVersion = `jellyfish2 --version | cut -f2 -d' ' | cut -f1 -d'.'`
 OBJECTS = KmerCode.o ErrorCorrection.o
 all: main.o $(OBJECTS)
 	$(CXX) -o rcorrector $(CXXFLAGS) $(OBJECTS) main.o $(LINKFLAGS)
 	if [ ! $(jellyfishPath) ] || [ $(jellyfishVersion) -ne 2 ] ; \
 	then \
-		if [ ! -f ./jellyfish/bin/jellyfish ] ; \
+		if [ ! -f ./jellyfish/bin/jellyfish2 ] ; \
 		then \
 			wget -O jellyfish.tar.gz https://github.com/gmarcais/Jellyfish/releases/download/v2.2.4/jellyfish-2.2.4.tar.gz ;\
 			tar -xzf jellyfish.tar.gz ; mv jellyfish-2.2.4 jellyfish ; rm jellyfish.tar.gz ; cd jellyfish && ./configure && make ;\
--- run_rcorrector.pl.ori	2018-04-21 17:48:43.459112787 +0200
+++ run_rcorrector.pl	2018-04-21 17:49:18.070152287 +0200
@@ -42,10 +42,10 @@
 	die "$usage\n" ;
 }
 
-my $jellyfishBin = "jellyfish" ;
-if ( -e "$WD/jellyfish/bin/jellyfish" )
+my $jellyfishBin = "jellyfish2" ;
+if ( -e "$WD/jellyfish/bin/jellyfish2" )
 {
-	$jellyfishBin = "$WD/jellyfish/bin/jellyfish" ;
+	$jellyfishBin = "$WD/jellyfish/bin/jellyfish2" ;
 }
 
 my $fileArguments ;