# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.3.4.ebuild,v 1.3 2013/08/11 14:55:22 jlec Exp $ EAPI=5 AUTOTOOLS_AUTORECONF=true inherit autotools-utils DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler" HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/" SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz" LICENSE="abyss" SLOT="0" IUSE="+mpi openmp" KEYWORDS="~amd64 ~x86" DEPEND=" dev-cpp/sparsehash mpi? ( virtual/mpi )" RDEPEND="${DEPEND}" # todo: --enable-maxk=N configure option # todo: fix automagic mpi toggling PATCHES=( "${FILESDIR}"/${P}-gcc-4.7.patch "${FILESDIR}"/${PN}-1.3.3-ac_prog_ar.patch "${FILESDIR}"/${P}-samtoafg.patch ) src_prepare() { tc-export AR sed -i -e "s/-Werror//" configure.ac || die #365195 sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die autotools-utils_src_prepare } src_configure() { local myeconfargs=( --docdir="${EPREFIX}/usr/share/doc/${PF}" $(use_enable openmp) ) autotools-utils_src_configure }