# ChangeLog for sci-biology/gbrowse # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/generic-genome-browser/ChangeLog,v 1.10 2007/07/29 17:07:38 phreak Exp $ 22 May 2012; Justin Lecher gbrowse-2.39.ebuild, gbrowse-2.45.ebuild, gbrowse-2.48.ebuild: Add missing eutils.eclass, bump to EAPI=4, remove unnecessary bits *gbrowse-2.48 (28 Feb 2012) 28 Feb 2012; Martin Mokrejs gbrowse-2.45.ebuild, +gbrowse-2.48.ebuild: added dependency on <=sci-biology/primer3-2, per http://generic-model-organism-system-database.450254.n5.nabble.com/PrimerDesi gner-working-in-2-40-tp4724773p5479669.html *gbrowse-2.45 (17 Jan 2012) 17 Jan 2012; Martin Mokrejs +gbrowse-2.45.ebuild, +files/GBrowseInstall.pm-2.45.patch: version bump and some fixes so that it works with webappconfig again? 17 Jan 2012; Martin Mokrejs gbrowse-2.39.ebuild: added dev-perl/TermReadKey to dependencies 30 Jul 2011; Martin Mokrejs gbrowse-2.39.ebuild, +files/disable-gbrowse_metadb_config.pl.patch, +files/gbrowse_metadb_config.pl.patch, +files/symlink.patch: Make sure portage does not run gbrowse_metadb_config.pl otherwise sandbox violation occurs when modifying /var/www/gbrowse2/databases/users.sqlite* file, maybe we could copy these during src_install to the {}, fix there and copy back to live filesystem? Improve error handling in gbrowse_metadb_config.pl. Fix symlink creation during install procedure. gbrowse-2.39.ebuild files/GBrowseInstall.pm-2.39.patch files/destdir.patch files/disable-gbrowse_metadb_config.pl.patch files/fix-PNG-export.patch files/gbrowse-slave.default files/gbrowse-slave.init.d files/gbrowse.conf.vhosts.d files/gbrowse_metadb_config.pl.patch files/symlink.patch 30 Jul 2011; Martin Mokrejs gbrowse-2.39.ebuild, +files/fix-PNG-export.patch: sci-biology/gbrowse: add missing brackets cause a perl error while exporting a PNG image gbrowse-2.39.ebuild files/fix-PNG-export.patch 30 Jul 2011; Martin Mokrejs gbrowse-2.39.ebuild, +files/destdir.patch: added support for --destdir, patch sent to upstream gbrowse-2.39.ebuild 30 Jul 2011; Martin Mokrejs gbrowse-2.39.ebuild, +files/destdir.patch: added support for --destdir, patch sent to upstream 30 Jul 2011; Martin Mokrejs -gbrowse-2.38.ebuild, -files/GBrowseInstall.pm-2.38.patch, +gbrowse-2.39.ebuild, +files/GBrowseInstall.pm-2.39.patch: version bump but still need to rewrite upstream's install procedure to prevent 'mkdir /var/lib/gbrowse2' from happening *gbrowse-2.39 (30 Jul 2011) 30 Jul 2011; Martin Mokrejs -gbrowse-2.38.ebuild, -files/GBrowseInstall.pm-2.38.patch, +gbrowse-2.39.ebuild, +files/GBrowseInstall.pm-2.39.patch: version bump but still need to rewrite upstream's install procedure to prevent 'mkdir /var/lib/gbrowse2' from happening 08 Jul 2011; Martin Mokrejs gbrowse-2.38.ebuild: Added dependency on >=perl-gcpan/Text-ParseWords-3.27, documented requirement of Bio::Root::Version >= 1.0069 *gbrowse-2.38 (26 Jun 2011) 26 Jun 2011; Justin Lecher -gbrowse-2.26.ebuild, -files/GBrowseInstall.pm-2.26.patch, -files/GBrowseInstall.pm-disable-gbrowse_metadb_config.pl.pm-2.26.patch, -gbrowse-2.33.ebuild, -files/GBrowseInstall.pm-2.33.patch, +gbrowse-2.38.ebuild, +files/GBrowseInstall.pm-2.38.patch: Version Bump 25 Jun 2011; Justin Lecher -gbrowse-1.70.ebuild, -gbrowse-2.00.ebuild, gbrowse-2.26.ebuild, gbrowse-2.33.ebuild: Cleaned ebuild, 'http://search.cpan.org/CPAN' found in thirdpartymirrors 05 Feb 2010; Andrey Kislyuk ChangeLog: Version bump 11 Oct 2009; Andrey Kislyuk ChangeLog: Version bump, rewrite and rename to gbrowse 29 Jul 2007; Christian Heim generic-genome-browser-1.58.ebuild: Fixing the DEPEND/RDEPEND for the move of net-www/apache to www-servers/apache (#78622). 23 Nov 2006; Francesco Riosa generic-genome-browser-1.58.ebuild: dev-db/mysql => virtual/mysql 14 Sep 2006; Olivier Fisette metadata.xml: Stepping down from maintaining this package. 13 Feb 2006; Michael Cummings generic-genome-browser-1.58.ebuild: Virtuals for some perl-core deps 28 Nov 2005; generic-genome-browser-1.58.ebuild: Switched from perl-module to perl-app eclass 19 Sep 2005; Olivier Fisette metadata.xml: Maintainer changed from Stephen Diener (MIA) to Olivier Fisette. 24 May 2005; Michael Cummings generic-genome-browser-1.58.ebuild: dev-perl/Digest-MD5 => perl-core/Digest-MD5 24 May 2005; Michael Cummings generic-genome-browser-1.58.ebuild: dev-perl/CGI => perl-core/CGI *generic-genome-browser-1.58 (23 Dec 2004) 23 Dec 2004; Olivier Fisette +metadata.xml, +generic-genome-browser-1.58.ebuild: Moved from app-sci/generic-genome-browser to sci-biology/generic-genome-browser. 03 Aug 2004; David Holm generic-genome-browser-1.58.ebuild: Added to ~ppc. *generic-genome-browser-1.58 (13 Jan 2004) 13 Jan 2004; Stephen Diener generic-genome-browser-1.58.ebuild: Initial import