--- Makefile.ori	2014-06-17 12:24:40.000000000 +0200
+++ Makefile	2014-06-17 12:26:47.000000000 +0200
@@ -39,12 +39,12 @@
 #
 ### PATHS
 
-       BBIN = /bin
-       UBIN = /usr/bin
-       LBIN = /usr/local/bin
+       BBIN = $(DESTDIR)/bin
+       UBIN = $(DESTDIR)/usr/bin
+       LBIN = $(DESTDIR)/usr/local/bin
  #%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
  #  REMEMBER: INSTALLDIR is the only variable that should be modified
- INSTALLDIR = $(LBIN)
+ INSTALLDIR = $(UBIN)
  #%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 
 #
@@ -97,19 +97,19 @@
 
        SGP2 = sgp2
  PARSEBLAST = parseblast
-     GENEID = geneid
+#     GENEID = geneid
    #  HSP2SR = blast2gff
 
 
-     GENEIDD = $(SRC)/geneid
+#     GENEIDD = $(SRC)/geneid
  #    HSP2SRD = $(SRC)/blast2gff
 
-   GENEIDSRC = $(wildcard $(addprefix $(GENEIDD)/src/, *.c)) \
-               $(wildcard $(addprefix $(GENEIDD)/include/, *.h))
+#   GENEIDSRC = $(wildcard $(addprefix $(GENEIDD)/src/, *.c)) \
+#               $(wildcard $(addprefix $(GENEIDD)/include/, *.h))
 #   HSP2SRSRC = $(wildcard $(addprefix $(HSP2SRD)/src/, *.c)) \
  #              $(wildcard $(addprefix $(HSP2SRD)/include/, *.h))
 
-     SRCCODE = $(GENEID)-sgp  $(PARSEBLAST) \
+     SRCCODE = $(PARSEBLAST) \
                $(SGP2)
 #    SRCCODE = $(GENEID)-sgp  $(PARSEBLAST) \
 #              $(HSP2SR) $(SGP2)
@@ -134,9 +134,9 @@
 cleanbin :
 	-@$(RM) -f $(wildcard $(BIN)/*);
 	rmdir $(BIN);
-	@echo "### Cleaning GENEID..."
-	@cd $(GENEIDD); \
-	 $(MAKE) clean;
+#	@echo "### Cleaning GENEID..."
+#	@cd $(GENEIDD); \
+#	 $(MAKE) clean;
 #	@echo "### Cleaning HSP2SR..."
 #	@cd $(HSP2SRD); \
 #	 $(MAKE) clean;
@@ -147,6 +147,7 @@
 
 installbin : $(BINCODE)
 	@echo "### COPYING BIN FILES TO $(INSTALLDIR)...";
+	mkdir -p $(INSTALLDIR);
 	@$(CP) -p $^ $(INSTALLDIR)/;
 
 #
@@ -155,14 +156,14 @@
 $(BIN) :
 	mkdir $(BIN);
 
-$(addprefix $(BIN)/, $(GENEID)-sgp) : $(addprefix $(GENEIDD)/bin/, $(GENEID))
-	@${CP} $(addprefix $(GENEIDD)/bin/, $(GENEID)) \
-           $(addprefix $(BIN)/, $(GENEID)-sgp)
-
-$(addprefix $(GENEIDD)/bin/, $(GENEID)) : $(GENEIDSRC)
-	@echo "### Making GENEID..."
-	@cd $(GENEIDD); \
-	 $(MAKE) -f ./Makefile;
+#$(addprefix $(BIN)/, $(GENEID)-sgp) : $(addprefix $(GENEIDD)/bin/, $(GENEID))
+#	@${CP} $(addprefix $(GENEIDD)/bin/, $(GENEID)) \
+#           $(addprefix $(BIN)/, $(GENEID)-sgp)
+
+#$(addprefix $(GENEIDD)/bin/, $(GENEID)) : $(GENEIDSRC)
+#	@echo "### Making GENEID..."
+#	@cd $(GENEIDD); \
+#	 $(MAKE) -f ./Makefile;
 
 #$(addprefix $(BIN)/, $(HSP2SR)) : $(addprefix $(HSP2SRD)/bin/, $(HSP2SR))
 #	@${CP} $(addprefix $(HSP2SRD)/bin/, $(HSP2SR)) \