# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $

EAPI=4

inherit toolchain-funcs

DESCRIPTION="SSAHA2: Sequence Search and Alignment by Hashing Algorithm"
HOMEPAGE="http://www.sanger.ac.uk/resources/software/ssaha2"
SRC_URI="
	x86? ( ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2_i686.tgz )
	amd64? ( ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2_x86_64.tgz )
	ia64? ( ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2_ia64.tgz )
	ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/samflag.c
	ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2-manual.pdf"

LICENSE="as-is"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""

use x86 && S="${WORKDIR}"/ssaha2_v"${PV}"_i686
use amd64 && S="${WORKDIR}"/ssaha2_v"${PV}"_x86_64
use ia64 && S="${WORKDIR}"/ssaha2_v"${PV}"_ia64

src_compile() {
	$(tc-getCC) ${CFLAGS} ${LDFLAGS} -o samflag "${DISTDIR}"/samflag.c || die "Failed to compile samflags"
}

src_install() {
	dobin samflag ssaha2 ssaha2Build ssahaSNP
	dodoc README "${DISTDIR}"/ssaha2-manual.pdf
}