# ChangeLog for sci-chemistry/coot # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ 02 Jun 2013; Justin Lecher coot-9999.ebuild, -files/9999-clipper-config.patch, -files/9999-goocanvas.patch, -files/9999-mmdb-config.patch, +files/9999-pc.patch, -files/9999-ssm.patch: Update pc patches 02 Jun 2013; Justin Lecher coot-9999.ebuild: Fix PYTHON() -> ${EPYTHON} for new eclasses 29 May 2013; Justin Lecher coot-9999.ebuild: Move to new python eclasses 29 May 2013; Justin Lecher coot-9999.ebuild, metadata.xml: Drop version from clipper 03 Jul 2012; Justin Lecher coot-9999.ebuild, -files/coot-9999-gcc47.patch: Gcc-4.7 support included upstream 14 Jun 2012; Justin Lecher coot-9999.ebuild, +files/coot-9999-gcc47.patch: Fix for gcc-4.7 25 Apr 2012; Justin Lecher -files/9999-libpng-1.5.patch, coot-9999.ebuild: Drop libpng-1.5 patch, included upstream 25 Apr 2012; Justin Lecher coot-9999.ebuild: Add fix for >glib-2.32 16 Mar 2012; Justin Lecher -files/9999-gl.patch, -files/9999-test.patch, coot-9999.ebuild: Drop gl and test patch -> included upstream 27 Feb 2012; Justin Lecher -files/9999-include.patch, -files/9999-lidia.patch, coot-9999.ebuild: Cleaned old patches, added goocanvas config option 25 Feb 2012; Justin Lecher -files/9999-include.patch, -files/9999-lidia.patch, coot-9999.ebuild: Cleaned old patches, added goocanvas config option 14 Jan 2012; Justin Lecher -Manifest, -Manifest: Dropped Manifest 14 Jan 2012; Justin Lecher coot-9999.ebuild: Call python_pkg_setup always 09 Jan 2012; Justin Lecher coot-9999.ebuild: Bumped EAPI to 4 and added new eautoreconf handling of autotools-utils.eclass 07 Oct 2011; Justin Lecher coot-9999.ebuild: Added dep on >=sys-devel/libtool-2.4-r2 07 Oct 2011; Justin Lecher coot-9999.ebuild: Moved to autotools-utils.eclass in order to have correct .a/la file handling, #385865; added png15 patch 06 Oct 2011; Justin Lecher +files/9999-libpng-1.5.patch, coot-9999.ebuild: Add png15 support and don't build static libs 16 Jul 2011; Justin Lecher +files/9999-ssm.patch, coot-9999.ebuild: Adopt to unbundled ssm 15 Jul 2011; Justin Lecher files/9999-mmdb-config.patch: Mmdb fix 29 Jun 2011; Justin Lecher +files/9999-clipper-config.patch, +files/9999-mmdb-config.patch, coot-9999.ebuild, +files/9999-test.patch, metadata.xml: Imported changes from tree 15 Jun 2011; Justin Lecher -files/9999-align.patch, coot-9999.ebuild: Updated to current HEAD 02 Jun 2011; Justin Lecher +files/9999-align.patch, coot-9999.ebuild: Fixes for latest HEAD 28 May 2011; Justin Lecher -files/9999-clipper.patch, files/9999-lidia.patch, coot-9999.ebuild: Cleaned for current HEAD 02 May 2011; Justin Lecher coot-9999.ebuild: Fix x11-libs/goocanvas SLOT 28 Apr 2011; Justin Lecher +files/9999-gl.patch, files/9999-lidia.patch, coot-9999.ebuild: Fixed underlinking problems 28 Apr 2011; Justin Lecher -files/9999-gsl.patch, -files/9999-openmp.patch, -files/9999-rappermc.patch, -files/fix-namespace-error.patch, -files/glib.m4, -files/gtk.m4: Cleaned old patches 07 Mar 2011; Justin Lecher coot-9999.ebuild: Correct Slots for gtk 3 introduction to tree 03 Mar 2011; Justin Lecher files/9999-lidia.patch, coot-9999.ebuild: Coot live fixes 20 Jan 2011; Justin Lecher coot-9999.ebuild: Fix tests 12 Jan 2011; Justin Lecher +files/9999-clipper.patch, +files/9999-gsl.patch, +files/9999-lidia.patch, files/9999-goocanvas.patch, files/9999-openmp.patch, coot-9999.ebuild: Correctly manage openmp and otehr linking 17 Dec 2010; Justin Lecher files/9999-openmp.patch, coot-9999.ebuild: Correct handling of OpenMp support 19 Nov 2010; Justin Lecher +files/9999-goocanvas.patch, coot-9999.ebuild: Better goocanvas detection 19 Nov 2010; Justin Lecher coot-9999.ebuild: Added x11-libs/goocanvas as DEPS 10 Nov 2010; Justin Lecher coot-9999.ebuild: Fix DEP on x11-libs/guile-gtk 24 Oct 2010; Justin Lecher +files/9999-include.patch, coot-9999.ebuild, files/9999-openmp.patch: Real OPENMP fix 20 Sep 2010; Justin Lecher +files/9999-openmp.patch, coot-9999.ebuild: Openmp linking fix 19 Sep 2010; Justin Lecher coot-9999.ebuild: virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction *coot-0.6.1 (30 Jan 2010) 30 Jan 2010; Justin Lecher (jlec) coot-0.6.ebuild, +coot-0.6.1.ebuild, coot-9999.ebuild, +files/fix-namespace-error.patch, +files/glib.m4, +files/gtk.m4: Version bump 14 Dec 2009; Justin Lecher (jlec) -files/0.5.2-as-needed.patch, -files/0.6_pre1-gcc4.4.patch, -files/9999-as-needed.patch, -files/9999-test-rama.patch, -files/0.5.2-gcc-4.3.patch, coot-9999.ebuild, -files/0.6_pre1-test-rama.patch, -files/9999-as-needed2.patch, -files/0.5.2-gcc-4.4.patch, -files/0.6_pre1-as-needed.patch, -files/9999-check-include.patch, -files/9999-gcc4.4.patch, -files/fix-namespace-error.patch, -files/glib.m4, -files/gtk.m4, -files/gtkgl.m4, -files/imlib.m4, -files/link-against-guile-gtk-properly.patch: fixes for upcoming release in coot-9999 Cleaned up patches 12 Dec 2009; Justin Lecher (jlec) coot-9999.ebuild: reduce number of macros which we patch added libidn as dep *coot-0.6 (04 Dec 2009) 04 Dec 2009; Justin Lecher (jlec) -coot-0.6_pre1-r2312.ebuild, -coot-0.6_pre1-r2327.ebuild, +coot-0.6.ebuild: Version bump to 0.6 Removed pre versions 13 Nov 2009; Justin Lecher (jlec) coot-9999.ebuild: removed dev-scheme/goosh dep since r2487 *coot-0.6_pre1-r2327 (03 Nov 2009) 03 Nov 2009; Justin Lecher (jlec) +coot-0.6_pre1-r2327.ebuild: bumped to finks latested released 05 Oct 2009; Justin Lecher (jlec) coot-0.5.2.ebuild, coot-9999.ebuild: econf dies itself 03 Oct 2009; Justin Lecher (jlec) ChangeLog: as-needed patch not needed anymore fixes for reduce not needed anymore rappermc fix included 20 Sep 2009; Justin Lecher (jlec) coot-9999.ebuild: upstream fixes COOT_TEST_DATA_DIR and included our patch for tests *coot-0.6_pre1-r2312 (16 Sep 2009) 16 Sep 2009; Justin Lecher (jlec) files/0.6_pre1-as-needed.patch, -coot-0.6_pre1-r2042.ebuild, files/0.6_pre1-gcc4.4.patch, +coot-0.6_pre1-r2312.ebuild, +files/0.6_pre1-test-rama.patch, coot-0.5.2.ebuild, coot-9999.ebuild: HOMEPAGE corrected bug 285068 bumped prerelease to r2312 which will be the version of the second prerelease Included src_test in prerelease 13 Sep 2009; Justin Lecher (jlec) files/9999-test-rama.patch, coot-9999.ebuild: src_test is working now (rev. 2296) 11 Sep 2009; Justin Lecher (jlec) +files/9999-test-rama.patch, coot-9999.ebuild: added patch to correct rama-data dir location for src_test 10 Sep 2009; Justin Lecher (jlec) files/9999-as-needed.patch, coot-9999.ebuild: src_test is functional now in 9999 Some rewritting 04 Sep 2009; Justin Lecher (jlec) -files/9999-check.patch, coot-9999.ebuild: Upstream fixed the check maketarget 31 Aug 2009; Justin Lecher (jlec) +files/9999-check.patch, coot-9999.ebuild, +files/9999-check-include.patch: prelimrary support of src_test added 11 Aug 2009; Justin Lecher (jlec) coot-9999.ebuild: gcc 4.4 compatibily fixed upstream 05 Aug 2009; Justin Lecher (jlec) -coot-0.6_pre1-r2041.ebuild, coot-0.6_pre1-r2042.ebuild, +files/0.5.2-gcc-4.4.patch, +files/0.6_pre1-gcc4.4.patch, coot-9999.ebuild, +files/9999-gcc4.4.patch, coot-0.5.2.ebuild: fixes for gcc4.4 and glibc-2.10 *coot-9999 (08 Jun 2009) 08 Jun 2009; Justin Lecher (jlec) +files/9999-as-needed.patch, +coot-9999.ebuild: added live ebuild *coot-0.6_pre1-r2042 (05 Jun 2009) 05 Jun 2009; Justin Lecher (jlec) +coot-0.6_pre1-r2042.ebuild: version including numerous QA fixes *coot-0.6_pre1-r2041 (04 Jun 2009) 04 Jun 2009; Justin Lecher (jlec) -coot-0.6_pre1-r2026.ebuild, -coot-0.6_pre1-r2037.ebuild, +coot-0.6_pre1-r2041.ebuild, -files/0.6_pre1-gcc-4.3.patch, -files/0.6_pre1-gtk.patch: Included our patches in upstream Clean up old versions *coot-0.6_pre1-r2037 (03 Jun 2009) *coot-0.6_pre1-r2026 (03 Jun 2009) 03 Jun 2009; Justin Lecher (jlec) +files/0.6_pre1-as-needed.patch, +coot-0.6_pre1-r2037.ebuild, +files/0.6_pre1-gtk.patch, +coot-0.6_pre1-r2026.ebuild, +files/0.6_pre1-gcc-4.3.patch: Added prerelease 17 Apr 2009; Justin Lecher (jlec) coot-0.5.2.ebuild: fixed the license correct one is GPL-3 since 0.4-pre1 *coot-0.5.2 (19 Feb 2009) 11 Feb 2009; Donnie Berkholz ; coot-0.1.2.ebuild, coot-0.3.1.ebuild, coot-0.3.3.ebuild: (#258543) Remove duplicate python deps (walch.martin at web.de). 06 Aug 2008; Ulrich Mueller metadata.xml: Add USE flag description to metadata wrt GLEP 56. *coot-0.4_pre2-r549 (19 Dec 2007) 19 Dec 2007; Donnie Berkholz ; +files/0.4_pre2-as-needed.patch, +files/0.4_pre2-link-against-guile-gtk-properly.patch, +files/0.4_pre2-r549-fix-namespace-error.patch, +coot-0.4_pre2-r549.ebuild: Bump to 0.4 prerelease, unkeyworded. Use a package.keywords entry with '**' for the keyword to install. *coot-0.3.3 (16 Aug 2007) 16 Aug 2007; Donnie Berkholz ; +files/0.3.3-as-needed.patch, +files/0.3.3-link-against-guile-gtk-properly.patch, +coot-0.3.3.ebuild: Bump. Reads CNS maps, handles anisotropy better, other bugfixes and features. 22 Jun 2007; Donnie Berkholz ; +files/0.3.1-link-against-guile-gtk-properly.patch, +files/0.3.1-fix-compilation-with-guile-1.8.patch, coot-0.3.1.ebuild: Add USE=new-interface to prefer gtk2, which is still experimental. Add patches to make it work with guile 1.8 and link against guile-gtk properly. Change src_install() make to emake -j1 so other MAKEOPTS get through. 30 May 2007; Donnie Berkholz ; coot-0.3.1.ebuild: Keyword ~ppc. 29 May 2007; Donnie Berkholz ; coot-0.3.1.ebuild: Require >=x11-libs/gtk-canvas-0.1.1-r2 for --as-needed linker flag. *coot-0.3.1 (29 May 2007) 29 May 2007; Donnie Berkholz ; +files/0.3.1-as-needed.patch, +coot-0.3.1.ebuild: Bump to latest version. Now uses external, slotted sci-libs/clipper instead of the one in ccp4, because it needs newer versions than those contained in ccp4. 15 Mar 2007; Danny van Dyk coot-0.1.2.ebuild: QA: Removed illegal use of ${ROOT}. Bug #168043 06 Jan 2007; Danny van Dyk -coot-0.1.2_pre1.ebuild: QA: Removed unused versions. 26 Sep 2006; Donnie Berkholz ; coot-0.1.2.ebuild: Stable on x86/ppc. 20 Sep 2006; Donnie Berkholz ; metadata.xml: (#148281) Change herd to sci-chemistry from sci. *coot-0.1.2 (06 Sep 2006) 06 Sep 2006; Donnie Berkholz ; +coot-0.1.2.ebuild: Bump. 05 Aug 2006; Donnie Berkholz ; metadata.xml: Remove myself as maintainer, anyone feel free to work on this, although I'll continue to do so as well. 07 Jul 2006; Donnie Berkholz ; metadata.xml: Update to my new email address. 28 Jun 2006; Donnie Berkholz ; coot-0.1.2_pre1.ebuild: Add missing dep on x11-libs/gtkglext. *coot-0.1.2_pre1 (16 Jun 2006) 16 Jun 2006; Donnie Berkholz ; +metadata.xml, +coot-0.1.2_pre1.ebuild: Add the Crystallographic Object-Oriented Toolkit for model building, completion and validation.