# ChangeLog for sci-chemistry/gromacs # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ *gromacs-4.6.9999 (28 Sep 2011) 28 Sep 2011; Christoph Junghans +gromacs-4.6.9999.ebuild: Added gromacs-4.6 live version 10 Sep 2011; Christoph Junghans gromacs-4.5.9999.ebuild, gromacs-9999.ebuild: Migrate to the bash-completion-r1 eclass 18 Jul 2011; Christoph Junghans gromacs-4.5.9999.ebuild, gromacs-9999.ebuild: sync with tree 25 Jun 2011; Christoph Junghans gromacs-4.5.9999.ebuild, gromacs-9999.ebuild: migrate to git-2 25 Jun 2011; Justin Lecher gromacs-4.5.9999.ebuild, gromacs-9999.ebuild, metadata.xml: migrate from 'git' to 'git-2' 21 Jun 2011; Christoph Junghans gromacs-4.5.9999.ebuild, gromacs-9999.ebuild: only USE=fkernels needs fortran 21 Jun 2011; Justin Lecher gromacs-4.5.9999.ebuild, gromacs-9999.ebuild: Added fortran-2.eclass support 19 Jun 2011; Christoph Junghans gromacs-4.5.9999.ebuild, metadata.xml: autotools is broken 10 Apr 2011; Christoph Junghans -gromacs-4.0.9999.ebuild: remove 4.0.* (EOM) 08 Mar 2011; Christoph Junghans gromacs-4.5.9999.ebuild, gromacs-9999.ebuild: added fixes from 4.5.3-r4 07 Mar 2011; Justin Lecher gromacs-4.0.9999.ebuild, gromacs-4.5.9999.ebuild, gromacs-9999.ebuild: Correct Slots for gtk 3 introduction to tree 19 Feb 2011; Christoph Junghans -gromacs-4.5.3-r3.ebuild: InCVS *gromacs-4.5.3-r3 (17 Feb 2011) 17 Feb 2011; Christoph Junghans -gromacs-4.5.3-r2.ebuild, +gromacs-4.5.3-r3.ebuild: version bump *gromacs-4.5.3-r2 (14 Feb 2011) 14 Feb 2011; Christoph Junghans -gromacs-4.5.3-r1.ebuild, +gromacs-4.5.3-r2.ebuild, gromacs-4.5.9999.ebuild, gromacs-9999.ebuild: bring back sse/sse2 useflag (bug #339837) 20 Jan 2011; Christoph Junghans gromacs-9999.ebuild: add back live manual 17 Jan 2011; Christoph Junghans gromacs-9999.ebuild: QA fixes 16 Dec 2010; Justin Lecher gromacs-4.0.9999.ebuild, gromacs-4.5.9999.ebuild, gromacs-9999.ebuild: Removal of fortran.eclass, #348851 25 Nov 2010; Alexey Shvetsov -gromacs-4.0.7-r5.ebuild, -files/gromacs-4.0.7_missing_distfiles.patch.gz, -files/gromacs-4.0.7_upstream2010-09-15.patch.gz, -gromacs-4.5.2.ebuild, -gromacs-4.5.3.ebuild: Moved to tree *gromacs-4.5.3 (23 Nov 2010) 23 Nov 2010; Christoph Junghans +gromacs-4.5.3.ebuild: version bump *gromacs-4.5.2 (30 Oct 2010) 30 Oct 2010; Christoph Junghans +gromacs-4.5.2.ebuild: Version bump 25 Oct 2010; Christoph Junghans gromacs-4.5.9999.ebuild, gromacs-9999.ebuild, metadata.xml: added natural vmd support (bug #340651#c8) 21 Oct 2010; Christoph Junghans gromacs-4.5.9999.ebuild, metadata.xml: added vmd use flag 17 Oct 2010; Christoph Junghans gromacs-4.0.7-r5.ebuild, gromacs-4.0.9999.ebuild: rename manual in distfiles 16 Oct 2010; Christoph Junghans gromacs-4.0.9999.ebuild, gromacs-4.5.9999.ebuild, gromacs-9999.ebuild: Live ebuild updates *gromacs-4.0.7-r5 (16 Oct 2010) 16 Oct 2010; Christoph Junghans +gromacs-4.0.7-r5.ebuild, +files/gromacs-4.0.7_missing_distfiles.patch.gz, +files/gromacs-4.0.7_upstream2010-09-15.patch.gz: Version bump *gromacs-4.5.1 (02 Sep 2010) 02 Sep 2010; Christoph Junghans -gromacs-4.5_beta3.ebuild, +gromacs-4.5.1.ebuild: version bump *gromacs-4.5_beta3 (11 Aug 2010) 11 Aug 2010; Alexey Shvetsov gromacs-4.0.9999.ebuild, -gromacs-4.5_beta2.ebuild, +gromacs-4.5_beta3.ebuild, gromacs-4.5.9999.ebuild, gromacs-9999.ebuild: Add epatch_user *gromacs-4.5_beta2 (02 Aug 2010) 02 Aug 2010; Christoph Junghans -gromacs-4.5_beta1.ebuild, +gromacs-4.5_beta2.ebuild, gromacs-4.5.9999.ebuild, gromacs-9999.ebuild: Version bump + new manual *gromacs-4.5.9999 (31 Jul 2010) *gromacs-4.5_beta1 (31 Jul 2010) 31 Jul 2010; Christoph Junghans +gromacs-4.5_beta1.ebuild, +gromacs-4.5.9999.ebuild, gromacs-9999.ebuild: Version bump 24 Jul 2010; Alexey Shvetsov gromacs-9999.ebuild: ffamber officialy shipped with gromacs from now on 08 Jul 2010; Christoph Junghans gromacs-4.0.9999.ebuild, gromacs-9999.ebuild: fix for bug #301854 04 Jul 2010; Christoph Junghans gromacs-4.0.9999.ebuild, -files/gromacs-4.0.9999-ccache.patch, -files/gromacs-4.0.9999-configure-gfortran.patch, gromacs-9999.ebuild: make it compile without fortran again 04 Jul 2010; Christoph Junghans gromacs-4.0.9999.ebuild, gromacs-9999.ebuild: Fixes for Bug #326331 28 Jun 2010; Christoph Junghans gromacs-4.0.9999.ebuild, +files/gromacs-4.0.9999-docdir.patch: docdir patch is still not in 4.0 branch *gromacs-4.0.7-r3 (22 Jun 2010) 22 Jun 2010; Christoph Junghans +gromacs-4.0.7-r3.ebuild, +files/gromacs-4.0.7to2010-06-08.patch.gz: added patches from stable branch *gromacs-4.0.7-r2 (26 Feb 2010) 26 Feb 2010; Alexey Shvetsov +gromacs-4.0.7-r2.ebuild: Add ffamber port to gromacs 18 Feb 2010; Alexey Shvetsov gromacs-9999.ebuild, -files/gromacs-9999-dirent.patch: Dropped unneded patches. They all were applied to git master 18 Feb 2010; Alexey Shvetsov gromacs-9999.ebuild, -files/gromacs-9999-as-needed.patch, -files/gromacs-9999-install-mdrun.patch: Dropped unneded patches. They all were applied to git master 09 Feb 2010; Christoph Junghans gromacs-9999.ebuild, +files/gromacs-9999-as-needed.patch: added as-needed fix 06 Feb 2010; Christoph Junghans -gromacs-4.0.7-r1.ebuild, -files/gromacs-4.0.9999-docdir.patch: InCvs 06 Feb 2010; Christoph Junghans gromacs-4.0.9999.ebuild, gromacs-9999.ebuild: docdir patch went upstream 01 Feb 2010; Christoph Junghans gromacs-9999.ebuild, +files/gromacs-9999-install-mdrun.patch: update live ebuild *gromacs-4.0.7-r1 (24 Jan 2010) 24 Jan 2010; Christoph Junghans -files/gromacs-4.0.4-configure-gfortran.patch, +gromacs-4.0.7-r1.ebuild, gromacs-4.0.9999.ebuild, +files/gromacs-4.0.9999-ccache.patch, +files/gromacs-4.0.9999-configure-gfortran.patch, gromacs-9999.ebuild: Fixes bug #302048 23 Jan 2010; Christoph Junghans gromacs-4.0.9999.ebuild, gromacs-9999.ebuild: fixed --as-needed confusion 21 Jan 2010; Christoph Junghans -gromacs-3.3.9999.ebuild, -gromacs-4.0.4.ebuild, -files/gromacs-4.0.4-sparc-cyclecounter.patch, -gromacs-4.0.5-r1.ebuild, -files/gromacs-4.0.5-docdir.patch, -files/gromacs-4.0.5-path-overflow.patch, gromacs-4.0.9999.ebuild, +files/gromacs-4.0.9999-docdir.patch, gromacs-9999.ebuild: sync with tree and removed old ebuilds 30 Nov 2009; Christoph Junghans files/gromacs-4.0.5-docdir.patch: docdir -> htmldir 30 Nov 2009; Christoph Junghans gromacs-4.0.5-r1.ebuild, +files/gromacs-4.0.5-docdir.patch: htmldoc was installed in the wrong path 22 Nov 2009; Christoph Junghans gromacs-4.0.5-r1.ebuild: build mpi and non-mpi libs, enable gsl by default *gromacs-4.0.5-r1 (14 Nov 2009) 14 Nov 2009; Christoph Junghans +files/gromacs-4.0.4-sparc-cyclecounter.patch, +gromacs-4.0.5-r1.ebuild, +files/gromacs-4.0.5-path-overflow.patch: fixes bug #284431 *gromacs-9999 (21 Jun 2009) *gromacs-4.0.9999 (21 Jun 2009) *gromacs-3.3.9999 (21 Jun 2009) 21 Jun 2009; Christoph Junghans +gromacs-3.3.9999.ebuild, +files/gromacs-4.0.4-configure-gfortran.patch, +gromacs-4.0.9999.ebuild, +gromacs-9999.ebuild, metadata.xml: added live ebuilds for old, stable, experimental branch 21 Jun 2009; Christoph Junghans gromacs-4.0.4.ebuild: Fixed some repoman errors 22 Feb 2009; Jeff Gardner gromacs-4.0.4.ebuild: Add 'append-ldflags' to facilitate building for users with --as-needed. *gromacs-4.0.4 (20 Feb 2009) 20 Feb 2009; Alexey Shvetsov -gromacs-4.0.3-r1.ebuild, +gromacs-4.0.4.ebuild: Version bump\! 20 Feb 2009; Alexey Shvetsov gromacs-4.0.3-r1.ebuild: Fix typo *gromacs-4.0.3-r1 (20 Feb 2009) 20 Feb 2009; Alexey Shvetsov +gromacs-4.0.3-r1.ebuild, -gromacs-4.0.3.ebuild: Add support for qm/mm with mopac7 for gromacs *gromacs-4.0.3 (20 Jan 2009) 20 Jan 2009; Alexey Shvetsov -gromacs-3.3.3.ebuild, +gromacs-4.0.3.ebuild: Version bump