# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 EAPI=5 PYTHON_COMPAT=( python2_7 ) inherit eutils flag-o-matic fortran-2 multilib python-single-r1 toolchain-funcs DATE="2014-09-10" DESCRIPTION="Delivering High-Performance Computational Chemistry to Science" HOMEPAGE="http://www.nwchem-sw.org/index.php/Main_Page" SRC_URI="http://www.nwchem-sw.org/images/Nwchem-${PV%_p*}.revision${PV#*_p}-src.${DATE}.tar.gz http://www.nwchem-sw.org/images/Util_md_sockets.patch.gz http://www.nwchem-sw.org/images/Hbar.patch.gz http://www.nwchem-sw.org/images/Tcenxtask.patch.gz http://www.nwchem-sw.org/images/Hnd_giaxyz_noinline.patch.gz http://www.nwchem-sw.org/images/Parallelmpi.patch.gz http://www.nwchem-sw.org/images/Makefile_gcc4x.patch.gz http://www.nwchem-sw.org/images/Bcast_ccsd.patch.gz http://www.nwchem-sw.org/images/Elpa_syncs.patch.gz http://www.nwchem-sw.org/images/Xlmpoles_ifort15.patch.gz http://www.nwchem-sw.org/images/Ifort15_fpp_offload.patch.gz http://www.nwchem-sw.org/images/Texas_iorb.patch.gz http://www.nwchem-sw.org/images/Dmapp_inc.patch.gz http://www.nwchem-sw.org/images/Print1e.patch.gz http://www.nwchem-sw.org/images/Hnd_rys.patch.gz http://www.nwchem-sw.org/images/Tddft_grad.patch.gz" LICENSE="ECL-2.0" SLOT="0" KEYWORDS="~x86 ~amd64" IUSE="blas cuda doc examples infiniband int64 lapack mrcc nwchem-tests openmp python scalapack" REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} ) scalapack? ( !int64 ) lapack? ( blas ) scalapack? ( blas )" RDEPEND=" sys-fs/sysfsutils blas? ( virtual/blas ) lapack? ( virtual/lapack ) scalapack? ( virtual/scalapack ) cuda? ( dev-util/nvidia-cuda-sdk ) int64? ( blas? ( virtual/blas[int64] ) lapack? ( virtual/lapack[int64] ) ) python? ( ${PYTHON_DEPS} )" DEPEND="${RDEPEND} virtual/pkgconfig app-shells/tcsh virtual/mpi[fortran] infiniband? ( || ( sys-cluster/openmpi[fortran,openmpi_fabrics_ofed] sys-cluster/mvapich2[fortran] ) ) doc? ( dev-texlive/texlive-latex dev-tex/latex2html )" LONG_S="${WORKDIR}/Nwchem-${PV%_p*}.revision${PV#*_p}-src.${DATE}" S="${WORKDIR}/${PN}" pkg_setup() { # fortran-2.eclass does not handle mpi wrappers export FC="mpif90" export F77="mpif77" export CC="mpicc" export CXX="mpic++" use openmp && FORTRAN_NEED_OPENMP=1 fortran-2_pkg_setup if use openmp; then # based on _fortran-has-openmp() of fortran-2.eclass local openmp="" local fcode=ebuild-openmp-flags.f local _fc=$(tc-getFC) pushd "${T}" cat <<- EOF > "${fcode}" 1 call omp_get_num_threads 2 end EOF for openmp in -fopenmp -xopenmp -openmp -mp -omp -qsmp=omp; do "${_fc}" "${openmp}" "${fcode}" -o "${fcode}.x" && break done rm -f "${fcode}.*" popd # append-flags "${openmp}" # append-ldflags "${openmp} export FC="${FC} ${openmp}" export F77="${F77} ${openmp}" export CC="${CC} ${openmp}" export CXX="${CXX} ${openmp}" fi use python && python-single-r1_pkg_setup } src_unpack() { unpack ${A} mv "${LONG_S}" "${S}" } src_prepare() { pushd "${S}"/src for p in Util_md_sockets Hbar Tcenxtask Parallelmpi Makefile_gcc4x Bcast_ccsd Elpa_syncs Xlmpoles_ifort15 Ifort15_fpp_offload Texas_iorb Dmapp_inc Print1e Hnd_rys Tddft_grad do epatch "${WORKDIR}"/"${p}.patch" done cd NWints/hondo epatch "${WORKDIR}"/Hnd_giaxyz_noinline.patch popd epatch "${FILESDIR}"/nwchem-6.1.1-nwchemrc.patch epatch "${FILESDIR}"/nwchem-6.5-icosahedron_zcoord.patch use python && epatch "${FILESDIR}"/nwchem-6.5-python_makefile.patch use doc && epatch "${FILESDIR}"/nwchem-6.3-r1-html_doc.patch sed \ -e "s:DBASIS_LIBRARY=\"'\$(SRCDIR)'\":DBASIS_LIBRARY=\"'${EPREFIX}/usr/share/NWChem'\":g" \ -i src/basis/MakeFile src/basis/GNUmakefile || die sed \ -e "s:DNWPW_LIBRARY=\"'\$(SRCDIR)'\":DNWPW_LIBRARY=\"'${EPREFIX}/usr/share/NWChem'\":g" \ -i src/nwpw/libraryps/GNUmakefile || die sed \ -e "s:-DCOMPILATION_DIR=\"'\$(TOPDIR)'\":-DCOMPILATION_DIR=\"''\":g" \ -i src/GNUmakefile src/MakeFile || die if [[ $(tc-getFC) == *-*-*-*-gfortran ]]; then sed \ -e "s:ifneq (\$(FC),gfortran):ifneq (\$(FC),$(tc-getFC)):g" \ -e "s:ifeq (\$(FC),gfortran):ifeq (\$(FC),$(tc-getFC)):g" \ -i src/config/makefile.h || die fi } src_compile() { export NWCHEM_LONG_PATHS=Y use openmp && export USE_OPENMP=1 export USE_MPI=y export USE_MPIF=y export USE_MPIF4=y export MPI_LOC="${EPREFIX}"/usr export MPI_INCLUDE=$MPI_LOC/include export MPI_LIB=$MPI_LOC/$(get_libdir) export LIBMPI="$(mpif90 -showme:link)" if use infiniband; then export ARMCI_NETWORK=OPENIB export MSG_COMMS=MPI else unset ARMCI_NETWORK fi if [ "$ARCH" = "amd64" ]; then export NWCHEM_TARGET=LINUX64 elif [ "$ARCH" = "ia64" ]; then export NWCHEM_TARGET=LINUX64 elif [ "$ARCH" = "x86" ]; then export NWCHEM_TARGET=LINUX elif [ "$ARCH" = "ppc" ]; then export NWCHEM_TARGET=LINUX else die "Unknown architecture" fi if use python ; then if [ "$ARCH" = "amd64" ] || [ "$ARCH" = "ia64" ]; then export USE_PYTHON64=yes fi export PYTHONHOME=/usr export PYTHONVERSION=$(eselect python show --python2 |awk -Fpython '{ print $2 }') export PYTHONPATH="./:${S}/contrib/python/" export NWCHEM_MODULES="all python" else export NWCHEM_MODULES="all" fi use mrcc && export MRCC_METHODS="TRUE" # Multi Reference Coupled Clusters export CCSDTQ="TRUE" # Coupled Clusters Singlets + Dublets + Triplets + Quadruplets export CCSDTLR="TRUE" # CCSDT (and CCSDTQ?) Linear Response export EACCSD="TRUE" # Electron Affinities at the CCSD level export IPCCSD="TRUE" # Ionisation Potentials at the CCSD level unset BLASOPT local blaspkg="blas" local lapackpkg="lapack" if use int64; then blaspkg="blas-int64" lapackpkg="lapack-int64" fi use blas && export BLASOPT="$($(tc-getPKG_CONFIG) --libs ${blaspkg})" use lapack && export BLASOPT+=" $($(tc-getPKG_CONFIG) --libs ${lapackpkg})" use scalapack && export BLASOPT+=" $($(tc-getPKG_CONFIG) --libs scalapack)" if use cuda; then export TCE_CUDA=Y export CUDA_PATH=/opt/cuda export CUDA=${CUDA_PATH}/bin/nvcc export CUDA_FLAGS="-arch=compute_20 -code=sm_20,compute_20" export CUDA_INCLUDE="-I${CUDA_PATH}/include" export CUDA_LIBS="-L${CUDA_PATH}/$(get_libdir) -lcublas -lcufft -lcudart -lcuda -lstdc++" fi export LARGE_FILES="TRUE" cd src if use blas && [ "$NWCHEM_TARGET" = "LINUX64" ]; then if use int64; then export BLAS_SIZE=8 export LAPACK_SIZE=8 export SCALAPACK_SIZE=8 else emake \ DIAG=PAR \ FC="$(tc-getFC)" \ CC="$(tc-getCC)" \ CXX="$(tc-getCXX)" \ NWCHEM_TOP="${S}" \ clean emake \ DIAG=PAR \ FC="$(tc-getFC)" \ CC="$(tc-getCC)" \ CXX="$(tc-getCXX)" \ NWCHEM_TOP="${S}" \ 64_to_32 export BLAS_SIZE=4 export LAPACK_SIZE=4 export SCALAPACK_SIZE=4 export USE_64TO32=y fi fi emake \ DIAG=PAR \ FC="$(tc-getFC)" \ CC="$(tc-getCC)" \ CXX="$(tc-getCXX)" \ NWCHEM_TOP="${S}" \ NWCHEM_EXECUTABLE="${S}/bin/${NWCHEM_TARGET}/nwchem" \ nwchem_config emake \ DIAG=PAR \ FC="$(tc-getFC)" \ CC="$(tc-getCC)" \ CXX="$(tc-getCXX)" \ NWCHEM_TOP="${S}" \ NWCHEM_EXECUTABLE="${S}/bin/${NWCHEM_TARGET}/nwchem" if use doc; then cd "${S}"/doc export VARTEXFONTS="${T}/fonts" emake \ DIAG=PAR \ NWCHEM_TOP="${S}" \ pdf html fi } src_install() { dobin bin/${NWCHEM_TARGET}/nwchem insinto /usr/share/NWChem/basis/ doins -r src/basis/libraries src/data insinto /usr/share/NWChem/nwpw doins -r src/nwpw/libraryps insinto /etc doins nwchemrc use examples && \ insinto /usr/share/NWChem/ && \ doins -r examples use nwchem-tests && \ insinto /usr/share/NWChem && \ doins -r QA/tests use doc && \ insinto /usr/share/doc/"${P}" && \ doins -r doc/nwahtml && \ doins -r web } pkg_postinst() { echo elog "The user will need to link \$HOME/.nwchemrc to /etc/nwchemrc" elog "or copy it in order to tell NWChem the right position of the" elog "basis library and other necessary data." echo }