blob: 2123bbc55b41659b2eb8a017281365259b5174c9 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
|
# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
JAVA_PKG_IUSE="doc source"
inherit git-r3 java-pkg-2 java-ant-2
DESCRIPTION="Java API for high-throughput sequencing data (HTS) formats"
HOMEPAGE="https://samtools.github.io/htsjdk/"
EGIT_REPO_URI="https://github.com/samtools/htsjdk.git"
LICENSE="MIT"
SLOT="0"
IUSE=""
KEYWORDS=""
CDEPEND="dev-java/commons-jexl:2
dev-java/commons-compress:0
dev-java/commons-logging:0
dev-java/gradle-bin:*"
DEPEND=">=virtual/jdk-1.8
${CDEPEND}"
RDEPEND=">=virtual/jre-1.8
${CDEPEND}"
EANT_BUILD_TARGET="all"
EANT_NEEDS_TOOLS="true"
JAVA_ANT_REWRITE_CLASSPATH="true"
EANT_GENTOO_CLASSPATH="commons-jexl-2,commons-compress,commons-logging"
java_prepare(){
default
}
src_compile(){
# work around gradle writing $HOME/.gradle and $HOME/.git
# https://github.com/samtools/htsjdk/issues/660#issuecomment-232155965
GRADLE_USER_HOME="${WORKDIR}" ./gradlew || die
}
src_install() {
cd build/libs || die
#for i in *-SNAPSHOT.jar; do
# java-pkg_newjar $i ${i/-[0-9]*.jar/.jar}
#done
java-pkg_newjar "${S}"/build/libs/*-SNAPSHOT.jar htsjdk.jar
use source && java-pkg_dosrc "${S}"/build/libs/*-sources.jar
use doc && java-pkg_dojavadoc "${S}"/build/libs/*-javadoc.jar
}
|
GitWeb
