aboutsummaryrefslogtreecommitdiff
blob: 8618f1cc9e6e9960530cef0b8c2c4499b4d5f687 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
####################################################################
#
# When you add an entry to the top of this file, add your name, the date, and
# an explanation of why something is getting masked. Please be extremely
# careful not to commit atoms that are not valid, as it can cause large-scale
# breakage, especially if it ends up in the daily snapshot.
#
## Example:
##
## # Dev E. Loper <developer@gentoo.org> (28 Jun 2012)
## # Masking  these versions until we can get the
## # v4l stuff to work properly again
## =media-video/mplayer-0.90_pre5
## =media-video/mplayer-0.90_pre5-r1
#
# - Best last rites (removal) practices -
# Include the following info:
# a) reason for masking
# b) bug # for the removal (and yes you should have one)
# c) date of removal (either the date or "in x days")
# d) the word "removal"
#
## Example:
##
## Dev E. Loper <developer@gentoo.org> (25 Jan 2012)
## Masked for removal in 30 days.  Doesn't work
## with new libfoo. Upstream dead, gtk-1, smells
## funny. (bug #987654)
## app-misc/some-package

#--- END OF EXAMPLES ---

# Benda Xu <heroxbd@gentoo.org> (2020-12-27)
# hdf-java is failing.  Upstream has splitted the software into
# HDFView and HDF Java.  Mask for removal.
# https://bugs.gentoo.org/761055
dev-java/hdf-java

# Aisha Tammy <gentoo@aisha.cc> (2020-11-19)
# mask unfetchable packages until someone fixes.
dev-lang/conceptual
dev-lang/pgi
dev-ml/lacaml
dev-perl/Bio-EnsEMBL
dev-util/f90cache
sci-biology/aghermann
sci-biology/argo-bin
sci-biology/bambino
sci-biology/BBmap
sci-biology/beagle
sci-biology/blue
sci-biology/cd-hit-auxtools
sci-biology/cegma
sci-biology/cgview-bin
sci-biology/clover
sci-biology/cnrun
sci-biology/conrad
sci-biology/cortex_var
sci-biology/cross_genome
sci-biology/dawg
sci-biology/EBARDenovo
sci-biology/ensembl-tools
sci-biology/ePCR
sci-biology/ESTate
sci-biology/estscan
sci-biology/eval
sci-biology/ffindex
sci-biology/FLASH
sci-biology/fsa
sci-biology/GAL
sci-biology/gap2caf
sci-biology/geneid
sci-biology/generecon
sci-biology/genomeview-bin
sci-biology/gfftools
sci-biology/glean
sci-biology/graf-bin
sci-biology/hydra-sv
sci-biology/ICC
sci-biology/IMAGE
sci-biology/jannovar
sci-biology/jtreeview
sci-biology/jtreeview-bin
sci-biology/kat
sci-biology/KING
sci-biology/kraken
sci-biology/lucy
sci-biology/MagicViewer
sci-biology/manatee-igs
sci-biology/manatee-jcvi
sci-biology/mavid
sci-biology/MeV
sci-biology/MolBioLib
sci-biology/mreps
sci-biology/mRNAmarkup
sci-biology/mrsfast
sci-biology/MuSeqBox
sci-biology/OBO-Edit
sci-biology/ONTO-PERL
sci-biology/ORFcor
sci-biology/pairagon
sci-biology/polyphen
sci-biology/primerD
sci-biology/prokka
sci-biology/reptile
sci-biology/RSeQC
sci-biology/scaffold_builder
sci-biology/sgp2
sci-biology/skewer-bin
sci-biology/smalt
sci-biology/SnpEff
sci-biology/snphylo
sci-biology/SPAdes
sci-biology/sra_sdk
sci-biology/staden_doc
sci-biology/subread
sci-biology/swissknife
sci-biology/tablet-bin
sci-biology/TransDecoder
sci-biology/trim_galore
sci-biology/twinscan
sci-biology/vague-bin
sci-biology/VelvetOptimiser
sci-biology/wcd
sci-biology/wgs_tools
sci-chemistry/camshift
sci-chemistry/dssp2pdb
sci-chemistry/mddnmr
sci-chemistry/nmrpipe
sci-chemistry/polygon
sci-chemistry/relion
sci-chemistry/talosn
sci-chemistry/trajng
sci-libs/amber99sbnmr-ildn
sci-libs/amber99sb_phipsi
sci-libs/ccif
sci-libs/etsf_io
sci-libs/fdlibm
sci-libs/fgsl
sci-libs/lwpr
sci-libs/modglue
sci-libs/superlu_dist
sci-mathematics/freefem++
sci-mathematics/lattE-macchiato
sci-mathematics/Macaulay2
sci-mathematics/pff
sci-misc/kotus-sanalista
sci-physics/fullprof-bin
sci-physics/openmx
x11-libs/tr