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# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
inherit perl-module
DESCRIPTION="Links and orients genome sequence contigs using mate-pair information or superscaffolds .agp files"
HOMEPAGE="https://www.hgsc.bcm.edu/software/atlas-link"
SRC_URI="https://www.hgsc.bcm.edu/sites/default/files/software/Atlas_Link/Atlas-link.tar.gz"
LICENSE="HGSC-BCM"
SLOT="0"
KEYWORDS=""
IUSE=""
# https://github.com/gitpan/Algorithm-ClusterPoints
DEPEND="dev-lang/perl
dev-perl/Graph
dev-perl/Algorithm-ClusterPoints
dev-perl/XML-DOM
dev-perl/Statistics-Descriptive"
RDEPEND="${DEPEND}"
S="${WORKDIR}"/Atlas-link
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