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# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=6
DESCRIPTION="Speed up bacterial genome assemblies by artemis and compare chromosome regions"
HOMEPAGE="http://contiguator.sourceforge.net"
SRC_URI="http://downloads.sourceforge.net/project/contiguator/CONTIGuator_v2.7.tar.gz
https://sourceforge.net/projects/contiguator/files/README.md"
LICENSE="GPL-3"
SLOT="0"
KEYWORDS="~amd64"
IUSE=""
DEPEND=""
RDEPEND="${DEPEND}
>=sci-biology/abacas-1.3.1
sci-biology/primer3
|| ( sci-biology/ncbi-tools++ sci-biology/ncbi-blast+ )
sci-biology/biopython
sci-biology/mummer
|| ( sci-biology/artemis || ( sci-biology/artemis-bin sci-biology/act-bin ) )"
S="${WORKDIR}"/CONTIGuator_v"${PV}"
src_install(){
dobin CONTIGuator.py
dodoc Manual.pdf "${DISTDIR}"/README.md
}
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