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# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
inherit toolchain-funcs
DESCRIPTION="An open-source environment for processing and displaying functional MRI data"
HOMEPAGE="http://afni.nimh.nih.gov/"
SRC_URI="https://github.com/afni/afni/archive/AFNI_${PV}.tar.gz -> ${P}.tar.gz"
S="${WORKDIR}/${PN}-AFNI_${PV}/src"
LICENSE="GPL-3+"
SLOT="0"
# SUMA error: https://ppb.chymera.eu/4223de.log
KEYWORDS=""
RDEPEND="
dev-libs/libf2c
dev-libs/expat
media-libs/freeglut
media-libs/glu
media-libs/netpbm
media-libs/qhull
media-video/mpeg-tools
sci-libs/gsl
sys-devel/llvm:*
media-libs/libjpeg-turbo:0
x11-libs/libGLw
x11-libs/libXft
x11-libs/libXi
x11-libs/libXpm
x11-libs/motif
"
DEPEND="${RDEPEND}
app-shells/tcsh
"
BUILD="linux_fedora_19_64"
BIN_CONFLICTS=(qdelaunay whirlgif djpeg cjpeg qhull rbox count)
src_prepare() {
# more easily applied here than via PATCHES at phase end.
eapply "${FILESDIR}/${PN}-20.1.16-python.patch" || die
find -type f -exec sed -i -e "s/-lXp //g" {} + || die
cp other_builds/Makefile.${BUILD} Makefile || die "Could not copy Makefile"
# Unbundle imcat
sed -e "s/ imcat / /g" \
-i Makefile.INCLUDE || die "Could not edit includes files."
sed -e "s~CC = /usr/bin/gcc -O2 -m64~CC = $(tc-getCC) \$(CFLAGS)~" \
-e "s~CCMIN = /usr/bin/gcc -m64~CCMIN = $(tc-getCC) \$(CFLAGS)~" \
-e "s~LD = /usr/bin/gcc~LD = $(tc-getCC)~" \
-e "s~AR = /usr/bin/ar~AR = $(tc-getAR)~" \
-e "s~RANLIB = /usr/bin/ranlib~RANLIB = $(tc-getRANLIB)~" \
-i Makefile || die "Could not edit Makefile"
# they provide somewhat problematic makefiles :(
sed -e "s~ifeq (\$(CC),gcc)~ifeq (1,1)~"\
-i SUMA/SUMA_Makefile || die "Could not edit SUMA/SUMA_Makefile"
# upstream checks if $CC is EXACTLY gcc, else sets variables for Mac
find "${S}" -iname "*Makefile*" | xargs sed -e "s~/usr/~${EPREFIX}/usr/~g;" -i || die
default
}
src_compile() {
emake -j1 all plugins suma_exec
}
src_install() {
emake INSTALLDIR="${ED}/usr/bin" install install_plugins
emake INSTALLDIR="${ED}/usr/$(get_libdir)" install_lib
for CONFLICT in ${BIN_CONFLICTS[@]}; do
rm "${ED}/usr/bin/${CONFLICT}" || die
done
}
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