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# ChangeLog for sci-biology/biopython
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.72 2013/09/17 16:07:56 jlec Exp $

*biopython-1.62-r1 (25 Sep 2013)

  25 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
  +biopython-1.62-r1.ebuild, +files/biopython-1.51-flex.patch,
  +files/biopython-1.62-SffIO.patch, +files/SeqRecord.py.patch,
  +files/adjust-trimpoints.patch, +metadata.xml:
  Upstream accidentally dropped some of my patch chunks while preparing 1.62
  release. Bringing them back myself at least through sci overlay.

*biopython-1.62 (17 Sep 2013)

  17 Sep 2013; Justin Lecher <jlec@gentoo.org> +biopython-1.62.ebuild:
  Version Bump

  02 Jul 2013; Justin Lecher <jlec@gentoo.org> biopython-1.61.ebuild:
  Fix deps for python

  06 Jun 2013; Justin Lecher <jlec@gentoo.org> biopython-1.61.ebuild:
  Keyword ~-linux

*biopython-1.61 (26 Apr 2013)

  26 Apr 2013; Justin Lecher <jlec@gentoo.org> +biopython-1.61.ebuild,
  metadata.xml:
  Version Bump

  14 Dec 2012; Ulrich Müller <ulm@gentoo.org> biopython-1.57.ebuild,
  biopython-1.58.ebuild, biopython-1.59.ebuild:
  Update LICENSE, HPND according to LICENSE file.

*biopython-1.59 (27 Feb 2012)

  27 Feb 2012; Andrey Kislyuk <weaver@gentoo.org> +biopython-1.59.ebuild:
  Version bump

  26 Dec 2011; Andrey Kislyuk <weaver@gentoo.org> +biopython-1.58.ebuild:
  Version bump

*biopython-1.58 (26 Dec 2011)

  26 Dec 2011; Andrey Kislyuk <weaver@gentoo.org> +biopython-1.58.ebuild:
  Version bump

  23 Jun 2011; Markos Chandras <hwoarang@gentoo.org> -biopython-1.56.ebuild:
  Remove old ebuilds. Requested by Arfrever

  28 May 2011; Brent Baude <ranger@gentoo.org> biopython-1.57.ebuild:
  Marking biopython-1.57 ppc for bug 365877

  24 May 2011; Markus Meier <maekke@gentoo.org> biopython-1.57.ebuild:
  x86 stable, bug #365877

  06 May 2011; Justin Lecher <jlec@gentoo.org> biopython-1.56.ebuild,
  biopython-1.57.ebuild:
  Cleaned DESCRIPTION

  05 May 2011; Markos Chandras <hwoarang@gentoo.org> biopython-1.57.ebuild:
  Stable on amd64 wrt bug #365877

*biopython-1.57 (03 Apr 2011)

  03 Apr 2011; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
  +biopython-1.57.ebuild:
  Version bump.

  30 Jan 2011; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
  -biopython-1.55.ebuild:
  Delete.

  30 Jan 2011; Raúl Porcel <armin76@gentoo.org> biopython-1.55.ebuild,
  biopython-1.56.ebuild:
  Drop alpha/sparc keywords

  15 Jan 2011; Pawel Hajdan jr <phajdan.jr@gentoo.org>
  biopython-1.56.ebuild:
  x86 stable wrt bug #351498

  14 Jan 2011; Brent Baude <ranger@gentoo.org> biopython-1.56.ebuild:
  stable ppc, bug 351498

  13 Jan 2011; Markos Chandras <hwoarang@gentoo.org> biopython-1.56.ebuild:
  Stable on amd64 wrt bug #351498

  06 Jan 2011; Brent Baude <ranger@gentoo.org> biopython-1.55.ebuild:
  Marking biopython-1.55 ppc for bug 341519

*biopython-1.56 (13 Dec 2010)

  13 Dec 2010; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
  -biopython-1.53.ebuild, -biopython-1.54.ebuild, +biopython-1.56.ebuild:
  Version bump.

  31 Oct 2010; Raúl Porcel <armin76@gentoo.org> biopython-1.55.ebuild:
  alpha/sparc stable wrt #341519

  21 Oct 2010; Thomas Kahle <tomka@gentoo.org> biopython-1.55.ebuild:
  x86 stable per bug 341519

  19 Oct 2010; Markos Chandras <hwoarang@gentoo.org> biopython-1.55.ebuild:
  Stable on amd64 wrt bug #341519

  15 Oct 2010; Brent Baude <ranger@gentoo.org> biopython-1.54.ebuild:
  stable ppc, bug 327151

  10 Oct 2010; Raúl Porcel <armin76@gentoo.org> biopython-1.54.ebuild:
  sparc stable wrt #327151

*biopython-1.55 (17 Sep 2010)

  17 Sep 2010; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
  +biopython-1.55.ebuild:
  Version bump.

  12 Sep 2010; Tobias Klausmann <klausman@gentoo.org> biopython-1.54.ebuild:
  Stable on alpha, bug #327151

  12 Jul 2010; Christian Faulhammer <fauli@gentoo.org>
  biopython-1.54.ebuild:
  stable x86, bug 327151

  06 Jul 2010; Markos Chandras <hwoarang@gentoo.org> biopython-1.54.ebuild:
  Stable on amd64 wrt bug #327151

*biopython-1.54 (05 Jun 2010)

  05 Jun 2010; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
  -biopython-1.49.ebuild, -files/biopython-1.49-flex.patch,
  -biopython-1.51.ebuild, -biopython-1.52.ebuild, +biopython-1.54.ebuild:
  Version bump.

  13 Feb 2010; Raúl Porcel <armin76@gentoo.org> biopython-1.53.ebuild:
  alpha/sparc stable wrt #301964

  07 Feb 2010; Markus Meier <maekke@gentoo.org> biopython-1.53.ebuild:
  amd64/x86 stable, bug #301964

  24 Jan 2010; Brent Baude <ranger@gentoo.org> biopython-1.53.ebuild:
  stable ppc, bug 301964

*biopython-1.53 (21 Dec 2009)

  21 Dec 2009; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
  +biopython-1.53.ebuild:
  Version bump. Set SUPPORT_PYTHON_ABIS.

  31 Oct 2009; Markus Meier <maekke@gentoo.org> biopython-1.52.ebuild:
  amd64/x86 stable, bug #290931

*biopython-1.52 (23 Sep 2009)

  23 Sep 2009; Andrey Kislyuk <weaver@gentoo.org> +biopython-1.52.ebuild:
  Version bump

*biopython-1.51 (09 Sep 2009)

  09 Sep 2009; Andrey Kislyuk <weaver@gentoo.org>
  +files/biopython-1.51-flex.patch, +biopython-1.51.ebuild:
  Version bump

  26 Aug 2009; Christian Faulhammer <fauli@gentoo.org> metadata.xml:
  remove now unused flag description

  26 Aug 2009; Christian Faulhammer <fauli@gentoo.org>
  -biopython-1.42.ebuild, -files/biopython-1.43-buildkdtree.patch,
  -biopython-1.44.ebuild, -files/biopython-1.44-sequtils-complement.patch,
  -biopython-1.47.ebuild, -files/biopython-1.47-kdtree.patch:
  clean up

  26 Aug 2009; Tobias Klausmann <klausman@gentoo.org> biopython-1.49.ebuild:
  Stable on alpha, bug #277822

  02 Aug 2009; nixnut <nixnut@gentoo.org> biopython-1.49.ebuild:
  ppc stable #277822

  20 Jul 2009; Jeremy Olexa <darkside@gentoo.org> biopython-1.49.ebuild:
  amd64 stable, bug 277822

  17 Jul 2009; Ferris McCormick <fmccor@gentoo.org> biopython-1.49.ebuild:
  Sparc stable --- bug #277822 --- ran tests successfully.

  14 Jul 2009; Christian Faulhammer <fauli@gentoo.org>
  biopython-1.49.ebuild:
  stable x86, bug 277822

  24 Mar 2009; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
  Giving up maintainership of this package.

*biopython-1.49 (16 Jan 2009)

  16 Jan 2009; Olivier Fisette <ribosome@gentoo.org>
  +files/biopython-1.49-flex.patch, +biopython-1.49.ebuild:
  Version bump. Thanks to Juan Aguado <juantxorena@gmail.com> for his work.
  Fixes bug #248799.

  06 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml:
  Add USE flag description to metadata wrt GLEP 56.

  14 Jul 2008; nixnut <nixnut@gentoo.org> biopython-1.44.ebuild:
  Stable on ppc wrt bug 221159

  07 Jul 2008; Raúl Porcel <armin76@gentoo.org> biopython-1.44.ebuild:
  alpha/sparc/x86 stable wrt #221159

*biopython-1.47 (06 Jul 2008)

  06 Jul 2008; Olivier Fisette <ribosome@gentoo.org>
  +files/biopython-1.47-kdtree.patch, +biopython-1.47.ebuild:
  New version. Better documentation installation. Added scripts and test
  suite. KDTree now enabled by default (requires switching to EAPI 1).

  06 Jul 2008; Olivier Fisette <ribosome@gentoo.org> biopython-1.44.ebuild:
  Stable on amd64.

  30 Jan 2008; Olivier Fisette <ribosome@gentoo.org> biopython-1.42.ebuild,
  biopython-1.44.ebuild:
  Q.A.: Quoted variables.

  30 Jan 2008; Olivier Fisette <ribosome@gentoo.org> -biopython-1.43.ebuild:
  Removed buggy version (see bug #202602).

*biopython-1.44 (30 Jan 2008)

  30 Jan 2008; Olivier Fisette <ribosome@gentoo.org>
  +files/biopython-1.44-sequtils-complement.patch, +biopython-1.44.ebuild:
  Fixed six_frame_translations function. Thanks to JTRiley
  <justin.t.riley@gmail.com> for his patch. (Fixes bug #202606.)

*biopython-1.43 (17 May 2007)

  17 May 2007; Olivier Fisette <ribosome@gentoo.org>
  +files/biopython-1.43-buildkdtree.patch, -biopython-1.40b.ebuild,
  +biopython-1.43.ebuild:
  New upstream version. Ebuild clean-up. Pruned old version.

  16 May 2007; Raúl Porcel <armin76@gentoo.org> biopython-1.42.ebuild:
  alpha stable wrt #153774

  05 Nov 2006; Christian Faulhammer <opfer@gentoo.org>
  biopython-1.42.ebuild:
  stabled x86, bug #153774

  03 Nov 2006; <blubb@gentoo.org> biopython-1.42.ebuild:
  stable on amd64

  03 Nov 2006; Olivier Fisette <ribosome@gentoo.org> -biopython-1.41.ebuild:
  Pruned old version.

  02 Nov 2006; nixnut <nixnut@gentoo.org> biopython-1.42.ebuild:
  Stable on ppc wrt bug 153774

  02 Nov 2006; Jason Wever <weeve@gentoo.org> biopython-1.42.ebuild:
  Stable on SPARC wrt bug #153774.

  14 Sep 2006; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
  Taking over maintainership.

*biopython-1.42 (12 Sep 2006)

  12 Sep 2006; Olivier Fisette <ribosome@gentoo.org> +biopython-1.42.ebuild:
  New upstream version.

  19 Jan 2006; George Shapovalov <george@gentoo.org> +biopython-1.41.ebuild:
  new version, cleaned up install

  30 Aug 2005; Olivier Fisette <ribosome@gentoo.org> -biopython-1.24.ebuild,
  -biopython-1.30.ebuild:
  Removed obsolete versions.

  12 Jun 2005; Bryan Østergaard <kloeri@gentoo.org> biopython-1.40b.ebuild:
  Stable on alpha.

  21 May 2005; Jason Wever <weeve@gentoo.org> biopython-1.40b.ebuild:
  Stable on SPARC.

  13 May 2005; Olivier Fisette <ribosome@gentoo.org> -biopython-1.10.ebuild,
  -biopython-1.21.ebuild, -biopython-1.23.ebuild, biopython-1.40b.ebuild:
  Removed obsolete versions. Added 1.40b to x86.

*biopython-1.40b (19 Feb 2005)

  19 Feb 2005; Olivier Fisette <ribosome@gentoo.org>
  +biopython-1.40b.ebuild:
  New version. Should fix bug #82498.

  29 Dec 2004; Ciaran McCreesh <ciaranm@gentoo.org> :
  Change encoding to UTF-8 for GLEP 31 compliance

*biopython-1.23 (23 Dec 2004)

  23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
  +biopython-1.10.ebuild, +biopython-1.21.ebuild, +biopython-1.23.ebuild,
  +biopython-1.24.ebuild, +biopython-1.30.ebuild:
  Moved from app-sci/biopython to sci-biology/biopython.

  13 Dec 2004; Jason Wever <weeve@gentoo.org> biopython-1.24.ebuild:
  Stable on sparc.

*biopython-1.30 (07 Oct 2004)

  07 Oct 2004; George Shapovalvo <george@gentoo.org> biopython-1.30.ebuild :
  new version (#51833)
  amd64 has problems with KDTree, will try to look into this more later

  05 May 2004; Bryan Østergaard <kloeri@gentoo.org> biopython-1.24.ebuild:
  Stable on alpha.

  03 Apr 2004; Peter Bienstman <pbienst@gentoo.org> biopython-1.24.ebuild:
  Marked stable on x86

*biopython-1.24 (29 Feb 2004)

  29 Feb 2004; Peter Bienstman <pbienst@gentoo.org> biopython-1.24.ebuild :
  version bump

*biopython-1.23 (30 Dec 2003)

  29 Feb 2004; Peter Bienstman <pbienst@gentoo.org> biopython-1.23.ebuild :
  marked stable on x86

  30 Dec 2003; George Shapovalvo <george@gentoo.org> biopython-1.23.ebuild :
  new version, reworked to use distutils. Thanks to 
  Peter Bienstman <Peter.Bienstman@rug.ac.be> for an update (#35727)

  02 Sep 2003; Alastair Tse <liquidx@gentoo.org> biopython-1.10.ebuild,
  biopython-1.21.ebuild:
  moved dev-python/Numeric to dev-python/numeric

*biopython-1.21 (08 Aug 2003)

  08 Aug 2003; George Shapovalov <george@gentoo.org> biopython-1.21.ebuild :
  new version, added few docs (#25428)
  thanks to Daniel Jaeggi <daniel@jaeggi.co.uk> for notification

  04 Jul 2003; Alastair Tse <liquidx@gentoo.org> biopython-1.10.ebuild:
  renamed reportlab dep

*biopython-1.10 (18 Feb 2003)

  18 Feb 2003; George Shapovalov <george@gentoo.org> ChangeLog, biopython-1.10.ebuild, files/digest-biopython-1.10 :
  initial release (#11617)
  Biopython - python module for Computational Moelcular Biology
  ebuild submitted by Daniel Jaeggi <daniel@jaeggi.co.uk>