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# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.10.1.ebuild,v 1.3 2009/09/22 11:43:28 maekke Exp $
EAPI=5
inherit toolchain-funcs
ERPIN_BATCH_V=1.4
DESCRIPTION="Easy RNA Profile IdentificatioN, an RNA motif search program"
HOMEPAGE="http://tagc.univ-mrs.fr/erpin/"
SRC_URI="
http://rna.igmors.u-psud.fr/download/Erpin/erpin${PV}.serv.tar.gz
http://rna.igmors.u-psud.fr/download/Erpin/ErpinBatch.${ERPIN_BATCH_V}.tar.gz"
LICENSE="all-rights-reserved"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86"
DEPEND="!sys-cluster/maui" # file collision
RDEPEND=""
S="${WORKDIR}"
src_prepare() {
rm -f erpin${PV}.serv/{bin,lib}/* || die
rm -f ErpinBatch.${ERPIN_BATCH_V}/erpin* || die
find -name '*.mk' | xargs sed -i \
-e 's/strip $@/echo skipping strip $@/' \
-e '/CFLAGS =/ d' \
-e "s/CC = .*/CC = $(tc-getCC)/" \
-e "s: -o : ${LDFLAGS} -o :g" \
-e "s:ar :$(tc-getAR) :g" || die
sed -i 's/cc -O2/$(tc-getCC) ${CFLAGS}/' erpin${PV}.serv/sum/sum.mk || die
}
src_compile() {
emake -C erpin${PV}.serv -f erpin.mk
}
src_install() {
dobin erpin${PV}.serv/bin/*
insinto /usr/share/${PN}
doins -r erpin${PV}.serv/scripts ErpinBatch.${ERPIN_BATCH_V}
exeinto /usr/share/${PN}
newexe "${FILESDIR}/erpincommand-${PV}.pl" erpincommand
dodoc erpin${PV}.serv/doc/doc*.pdf
}
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