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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
AUTOTOOLS_AUTORECONF=true
inherit autotools-utils toolchain-funcs git-r3
DESCRIPTION="exonerate-2.2.0 with patches to add GFF3 formatted output"
HOMEPAGE="https://github.com/hotdogee/exonerate-gff3"
SRC_URI=""
EGIT_REPO_URI="https://github.com/hotdogee/exonerate-gff3.git"
LICENSE="GPL-3"
SLOT="0"
KEYWORDS=""
IUSE="utils test threads"
REQUIRED_USE="test? ( utils )"
# block with sci-biology/exonerate , maybe the best would be to change SRC_URI in sci-biology/exonerate
DEPEND="
!sci-biology/exonerate
dev-libs/glib:2"
RDEPEND="${DEPEND}"
AUTOTOOLS_IN_SOURCE_BUILD=1
PATCHES=( "${FILESDIR}"/${P}-asneeded.patch )
src_prepare() {
tc-export CC
sed \
-e 's: -O3 -finline-functions::g' \
-i configure.in || die
# we patch the configure.in file like sci-biology/exonerate:gentoo does, though it is ugly hack
# mv configure.in configure.ac
autotools-utils_src_prepare
}
src_configure() {
local myeconfargs=(
$(use_enable utils utilities)
$(use_enable threads pthreads)
--enable-largefile
--enable-glib2
)
autotools-utils_src_configure
}
src_install() {
autotools-utils_src_install
doman doc/man/man1/*.1
}
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