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# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
DESCRIPTION="Tools for bioinformatics (Tallymer, Readjoiner, gff3validator, ...)"
HOMEPAGE="http://genometools.org"
SRC_URI="http://genometools.org/pub/${P}.tar.gz"
LICENSE="ICS"
SLOT="0"
KEYWORDS=""
IUSE="cairo"
DEPEND="
dev-libs/glib
x11-libs/pango
cairo? ( x11-libs/cairo )
sci-biology/samtools:0.1-legacy
dev-db/sqlite:3
>=dev-lang/lua-5.1:=
dev-lua/lpeg
dev-lua/luafilesystem
dev-lua/lua-md5
dev-lang/luajit
dev-libs/tre"
RDEPEND="${DEPEND}"
src_prepare(){
sed -e "s#/usr/local#"${EPREFIX}"/usr#g" -i Makefile || die
sed -e "s#/usr/include/bam#${EPREFIX}/usr/include/bam-0.1-legacy#" -i Makefile || die
sed -e "s#-lbam#-lbam-0.1-legacy#" -i Makefile || die
eapply_user
}
src_compile(){
local myemakeargs=( useshared=yes )
! use cairo && myemakeargs+=( cairo=no )
use x86 && myemakeargs+=( 32bit=yes )
use amd64 && myemakeargs+=( 64bit=yes )
emake ${myemakeargs}
}
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