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# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
PYTHON_COMPAT=( python{3_4,3_5} ) # requires python >= 3.1
inherit git-r3 eutils flag-o-matic
DESCRIPTION="K-mer Analysis Toolkit (histogram, filter, compare sets, plot)"
HOMEPAGE="https://github.com/TGAC/KAT"
EGIT_REPO_URI="https://github.com/TGAC/KAT.git"
LICENSE="GPL-3+"
SLOT="0"
KEYWORDS=""
IUSE="cpu_flags_x86_sse"
DEPEND="
dev-lang/python:3
>=dev-libs/boost-1.52
dev-python/matplotlib
dev-python/numpy
sci-libs/scipy
dev-python/sphinx"
RDEPEND="${DEPEND}"
# contains bundled a modified version of jellyfish-2.2.0 (libkat_jellyfish.{a,so})
src_prepare(){
sh ./autogen.sh . || die
local myconf=()
myconf+=( --disable-gnuplot ) # python3 does better image rendering, no need for gnuplot
use cpu_flags_x86_sse && myconf+=( $(use_with cpu_flags_x86_sse sse) ) # pass down to jellyfish-2.20/configure
PYTHON_VERSION=3 econf ${myconf[@]}
eapply_user
}
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