aboutsummaryrefslogtreecommitdiff
blob: 7f9450200daa45b9ee01002fe8e19274caf1d157 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
# ChangeLog for sci-biology/ncbi-tools++
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $

  14 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
  ncbi-tools++-9.0.0-r1.ebuild,
  +files/ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch:
  Add upstream ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch with
  line
  offset changes.

  13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
  ncbi-tools++-9.0.0-r1.ebuild, ncbi-tools++-12.0.0.ebuild,
  +files/ncbi-tools++-9.0.0-fix-svn-URL-upstream.patch,
  +files/ncbi-tools++-12.0.0-fix-svn-URL-upstream.patch:
  Fix URL to point to a public SVN repository (an upstream patch from email
  list):

  Date: Sun, 28 Jul 2013 22:05:34 -0400
  CC: <cpp@ncbi.nlm.nih.gov>
  Subject: Re: [C++] new project startup example needed

  13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
  ncbi-tools++-12.0.0.ebuild,
  files/ncbi-tools++-9.0.0-fix-creaders-linking.patch,
  +files/ncbi-tools++-12.0.0-fix-FreeTDS-upstream.patch,
  files/ncbi-tools++-12.0.0-fix-creaders-linking.patch:
  Added an upstream patch from:

  Date: Wed, 28 Aug 2013 10:50:29 -0400
  List cpp <cpp@ncbi.nlm.nih.gov>
  Subject: Re: [C++] error building ncbi toolkit v.12.0.0

  Fixed line offsets in the ncbi-tools++-12.0.0-fix-creaders-linking.patch
  file.

  Fixed file path in ncbi-tools++-9.0.0-fix-creaders-linking.patch header.

  The patches copied blindly from ncbi-tools++-9.0.0-r1 under 12.0.0 need to be
  adjusted still to have correct line numbers. They do NOT apply cleanly at the
  moment.

  13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
  ncbi-tools++-9.0.0-r1.ebuild, ncbi-tools++-12.0.0.ebuild,
  files/ncbi-tools++-9.0.0-as-needed.patch,
  +files/ncbi-tools++-9.0.0-fix-undef-reference-to-GenBankReaders_Register_Id1.
  patch, files/ncbi-tools++-12.0.0-as-needed.patch:
  files/ncbi-tools++-12.0.0-as-needed.patch
  files/ncbi-tools++-9.0.0-as-needed.patch
  
  Remove redundant connect per message from Aaron Ucko <ucko@ncbi.nlm.nih.gov>:
  
  > +DLL_LIB  = xncbi xutil seqset connect xconnect xnetblast
  Then simply remove connect, which is redundant with xconnect.  (connect
  consists of code shared with NCBI's C Toolkit; xconnect adds a C++
  layer.)


  13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
  ncbi-tools++-12.0.0.ebuild,
  +files/ncbi-tools++-12.0.0-fix-creaders-linking.patch:
  No, the fix-creaders-linking is needed for 12.0.0 as well.

*ncbi-tools++-12.0.0 (13 Sep 2013)

  13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
  +ncbi-tools++-12.0.0.ebuild, +files/ncbi-tools++-12.0.0-as-needed.patch,
  +files/ncbi-tools++-12.0.0-conf-opts.patch:
  Latest release which needs so far only the two Gentoo patches. Would
  be better to drop ${PV} from their filename to avoid their duplication
  I think.

  13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
  ncbi-tools++-9.0.0-r1.ebuild,
  +files/ncbi-tools++-9.0.0-fix-creaders-linking.patch:
  add glew to dependencies inferrred via mesa
  fix lib/libxobjread.so: undefined reference to 'AlignmentFileFree' message by
  upstream patch

  12 Jun 2013; Justin Lecher <jlec@gentoo.org> ncbi-tools++-9.0.0-r1.ebuild:
  Drop empty line

  12 Jun 2013; Justin Lecher <jlec@gentoo.org> ncbi-tools++-9.0.0-r1.ebuild:
  Drop autotools.eclass

  01 Apr 2013; Justin Lecher <jlec@gentoo.org> ncbi-tools++-9.0.0-r1.ebuild:
  Some Prefix love

  01 Apr 2013; Justin Lecher <jlec@gentoo.org> ncbi-tools++-9.0.0-r1.ebuild:
  Some Prefix love


  03 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
  Document USE

  03 Mar 2013; Justin Lecher <jlec@gentoo.org> ncbi-tools++-9.0.0.ebuild,
  ncbi-tools++-9.0.0-r1.ebuild:
  Clean whitespace errors

  03 Mar 2013; Justin Lecher <jlec@gentoo.org> +metadata.xml:
  Add metadata.xml