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# ChangeLog for sci-biology/ncbi-tools++
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $

  23 Jun 2015; Horea Christian <h.chr@mail.ru> ncbi-tools++-12.0.0.ebuild:
  added dep needed at build-time

  11 Jun 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
  +files/ncbi-tools++-12.0.0-bdb6.patch, ncbi-tools++-12.0.0.ebuild:
  sci-biology/ncbi-tools++: added upstream patch to compile against sys-
  libs/db-6.0.30

  17 Apr 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
  ncbi-tools++-12.0.0.ebuild:
  sci-biology/ncbi-tools++: re-added KEYWORDS

  18 Feb 2015; Justin Lecher <jlec@gentoo.org> ncbi-tools++-12.0.0.ebuild:
  sci-biology/ncbi-tools++: fix SLOT operators; correct python deps

  16 Sep 2014; Christoph Junghans <ottxor@gentoo.org>
  -files/ncbi-tools++-12.0.0-as-needed.patch,
  -files/ncbi-tools++-9.0.0-as-needed.patch,
  -files/ncbi-tools++-9.0.0-conf-opts.patch,
  -files/ncbi-tools++-9.0.0-disable_test_compress.patch,
  -files/ncbi-tools++-9.0.0-fix-creaders-linking.patch,
  -files/ncbi-tools++-9.0.0-fix-order-of-libs.patch,
  -files/ncbi-tools++-9.0.0-fix-svn-URL-upstream.patch, -files/ncbi-tools++-9.0.
  0-fix-undef-reference-to-GenBankReaders_Register_Id1.patch,
  -files/ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch,
  -ncbi-tools++-9.0.0-r1.ebuild, -ncbi-tools++-9.0.0.ebuild, metadata.xml,
  ncbi-tools++-12.0.0.ebuild:
  major clean, drop old version and unused patches

  23 Jun 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> ChangeLog:
  add patches for 12.0.0 to support autoconf-2.60 (so far 2.59 was needed),
  patches from upstream:
  http://www.ncbi.nlm.nih.gov/viewvc/v1?view=revision&revision=62745
  http://www.ncbi.nlm.nih.gov/viewvc/v1?view=revision&revision=62750
  http://www.ncbi.nlm.nih.gov/viewvc/v1?view=revision&revision=62760

  14 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
  ncbi-tools++-9.0.0-r1.ebuild:
  Support at least when user passes USE="gnutls -ssl -openssl" but what we
  really want is to prefer gnutls over openssl if both are available on the
  system.

  14 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
  ncbi-tools++-9.0.0-r1.ebuild,
  +files/ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch:
  Add upstream ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch with
  line
  offset changes.

  13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
  ncbi-tools++-9.0.0-r1.ebuild, ncbi-tools++-12.0.0.ebuild,
  +files/ncbi-tools++-9.0.0-fix-svn-URL-upstream.patch,
  +files/ncbi-tools++-12.0.0-fix-svn-URL-upstream.patch:
  Fix URL to point to a public SVN repository (an upstream patch from email
  list):

  Date: Sun, 28 Jul 2013 22:05:34 -0400
  CC: <cpp@ncbi.nlm.nih.gov>
  Subject: Re: [C++] new project startup example needed

  13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
  ncbi-tools++-12.0.0.ebuild,
  files/ncbi-tools++-9.0.0-fix-creaders-linking.patch,
  +files/ncbi-tools++-12.0.0-fix-FreeTDS-upstream.patch,
  files/ncbi-tools++-12.0.0-fix-creaders-linking.patch:
  Added an upstream patch from:

  Date: Wed, 28 Aug 2013 10:50:29 -0400
  List cpp <cpp@ncbi.nlm.nih.gov>
  Subject: Re: [C++] error building ncbi toolkit v.12.0.0

  Fixed line offsets in the ncbi-tools++-12.0.0-fix-creaders-linking.patch
  file.

  Fixed file path in ncbi-tools++-9.0.0-fix-creaders-linking.patch header.

  The patches copied blindly from ncbi-tools++-9.0.0-r1 under 12.0.0 need to be
  adjusted still to have correct line numbers. They do NOT apply cleanly at the
  moment.

  13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
  ncbi-tools++-9.0.0-r1.ebuild, ncbi-tools++-12.0.0.ebuild,
  files/ncbi-tools++-9.0.0-as-needed.patch,
  +files/ncbi-tools++-9.0.0-fix-undef-reference-to-GenBankReaders_Register_Id1.
  patch, files/ncbi-tools++-12.0.0-as-needed.patch:
  files/ncbi-tools++-12.0.0-as-needed.patch
  files/ncbi-tools++-9.0.0-as-needed.patch
  
  Remove redundant connect per message from Aaron Ucko <ucko@ncbi.nlm.nih.gov>:
  
  > +DLL_LIB  = xncbi xutil seqset connect xconnect xnetblast
  Then simply remove connect, which is redundant with xconnect.  (connect
  consists of code shared with NCBI's C Toolkit; xconnect adds a C++
  layer.)


  13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
  ncbi-tools++-12.0.0.ebuild,
  +files/ncbi-tools++-12.0.0-fix-creaders-linking.patch:
  No, the fix-creaders-linking is needed for 12.0.0 as well.

*ncbi-tools++-12.0.0 (13 Sep 2013)

  13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
  +ncbi-tools++-12.0.0.ebuild, +files/ncbi-tools++-12.0.0-as-needed.patch,
  +files/ncbi-tools++-12.0.0-conf-opts.patch:
  Latest release which needs so far only the two Gentoo patches. Would
  be better to drop ${PV} from their filename to avoid their duplication
  I think.

  13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
  ncbi-tools++-9.0.0-r1.ebuild,
  +files/ncbi-tools++-9.0.0-fix-creaders-linking.patch:
  add glew to dependencies inferrred via mesa
  fix lib/libxobjread.so: undefined reference to 'AlignmentFileFree' message by
  upstream patch

  12 Jun 2013; Justin Lecher <jlec@gentoo.org> ncbi-tools++-9.0.0-r1.ebuild:
  Drop empty line

  12 Jun 2013; Justin Lecher <jlec@gentoo.org> ncbi-tools++-9.0.0-r1.ebuild:
  Drop autotools.eclass

  01 Apr 2013; Justin Lecher <jlec@gentoo.org> ncbi-tools++-9.0.0-r1.ebuild:
  Some Prefix love

  01 Apr 2013; Justin Lecher <jlec@gentoo.org> ncbi-tools++-9.0.0-r1.ebuild:
  Some Prefix love


  03 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
  Document USE

  03 Mar 2013; Justin Lecher <jlec@gentoo.org> ncbi-tools++-9.0.0.ebuild,
  ncbi-tools++-9.0.0-r1.ebuild:
  Clean whitespace errors

  03 Mar 2013; Justin Lecher <jlec@gentoo.org> +metadata.xml:
  Add metadata.xml