blob: 77f972b614f62c15665a8025828bbc5a4d510a15 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
|
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/maq/maq-0.7.1.ebuild,v 1.3 2009/02/26 17:36:19 weaver Exp $
DESCRIPTION="SAM (Sequence Alignment/Map), a format for storing large nucleotide sequence alignments"
HOMEPAGE="http://${PN}.sourceforge.net/"
SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2"
LICENSE="MIT"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86"
DEPEND=""
RDEPEND=""
src_unpack() {
unpack ${A}
sed -i 's/^CFLAGS=/CFLAGS+=/' "${S}"/{Makefile,misc/Makefile}
}
src_install() {
dobin razip bgzip samtools || die
dobin misc/{faidx,md5sum-lite,md5fa,maq2sam-short,maq2sam-long,wgsim,*.pl} || die
insinto /usr/share/${PN}
doins -r examples || die
doman ${PN}.1 || die
dodoc ChangeLog NEWS
}
|