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# ChangeLog for sci-chemistry/gromacs
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $

  18 Jan 2013; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
  live ebuild update

  30 Dec 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
  further clean up

  29 Dec 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
  fixed build with newer mkl

  27 Dec 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
  sci-chemistry/gromacs: clean up

  26 Dec 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
  fixed openmm suffix

  26 Dec 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
  fixed another typo

  26 Dec 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
  fixed typo

  26 Dec 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild,
  metadata.xml:
  Added mkl support

  22 Dec 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild,
  gromacs-9999.ebuild, metadata.xml:
  sync with gx86

  20 Dec 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
  fortran is gone

  08 Dec 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.9999.ebuild,
  gromacs-4.6.9999.ebuild, gromacs-9999.ebuild:
  CMAKE_BUILD_DIR -> BUILD_DIR

  30 Nov 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
  sync with gx86

  27 Nov 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild,
  metadata.xml:
  added openmm support

  19 Nov 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
  live ebuild update

  04 Oct 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild,
  gromacs-9999.ebuild:
  live ebuild update

  03 Oct 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild,
  metadata.xml:
  hybrid stuff got merged

  09 Aug 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
  use ninja if available

  25 Jul 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.9999.ebuild,
  gromacs-4.6.9999.ebuild, gromacs-9999.ebuild:
  added ~x86-macos

  19 Jun 2012; Alexey Shvetsov <alexxy@gentoo.org> gromacs-4.6.9999.ebuild,
  gromacs-9999.ebuild, metadata.xml:
  [sci-chemistry/gromacs] Add new acceleration use flags for gromacs

  11 Jun 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild,
  metadata.xml:
  add support for new hybrid kernels

  28 Apr 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
  [sci-chemistry/gromacs] add more mirrors

  19 Apr 2012; Alexey Shvetsov <alexxy@gentoo.org> gromacs-4.5.9999.ebuild,
  gromacs-4.6.9999.ebuild, gromacs-9999.ebuild:
  [sci-chemistry/gromacs] Also add http mirror git uri

  04 Mar 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.9999.ebuild,
  gromacs-9999.ebuild:
  removed obsolete call to env-update

  04 Mar 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
  reworked fortran and openmp support

  12 Feb 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
  sci-chemistry/gromacs: clean up

  12 Feb 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
  fixed threads and mpi

  05 Feb 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
  handle new vmd detection

  05 Feb 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
  added openmp support

*gromacs-4.6.9999 (28 Sep 2011)

  28 Sep 2011; Christoph Junghans <ottxor@gentoo.org> +gromacs-4.6.9999.ebuild:
  Added gromacs-4.6 live version

  10 Sep 2011; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.9999.ebuild,
  gromacs-9999.ebuild:
  Migrate to the bash-completion-r1 eclass

  18 Jul 2011; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.9999.ebuild,
  gromacs-9999.ebuild:
  sync with tree

  25 Jun 2011; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.9999.ebuild,
  gromacs-9999.ebuild:
  migrate to git-2

  25 Jun 2011; Justin Lecher <jlec@gentoo.org> gromacs-4.5.9999.ebuild,
  gromacs-9999.ebuild, metadata.xml:
  migrate from 'git' to 'git-2'

  21 Jun 2011; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.9999.ebuild,
  gromacs-9999.ebuild:
  only USE=fkernels needs fortran

  21 Jun 2011; Justin Lecher <jlec@gentoo.org> gromacs-4.5.9999.ebuild,
  gromacs-9999.ebuild:
  Added fortran-2.eclass support

  19 Jun 2011; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.9999.ebuild,
  metadata.xml:
  autotools is broken

  10 Apr 2011; Christoph Junghans <ottxor@gentoo.org> -gromacs-4.0.9999.ebuild:
  remove 4.0.* (EOM)

  08 Mar 2011; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.9999.ebuild,
  gromacs-9999.ebuild:
  added fixes from 4.5.3-r4

  07 Mar 2011; Justin Lecher <jlec@gentoo.org> gromacs-4.0.9999.ebuild,
  gromacs-4.5.9999.ebuild, gromacs-9999.ebuild:
  Correct Slots for gtk 3 introduction to tree

  19 Feb 2011; Christoph Junghans <ottxor@gentoo.org> -gromacs-4.5.3-r3.ebuild:
  InCVS

*gromacs-4.5.3-r3 (17 Feb 2011)

  17 Feb 2011; Christoph Junghans <ottxor@gentoo.org> -gromacs-4.5.3-r2.ebuild,
  +gromacs-4.5.3-r3.ebuild:
  version bump

*gromacs-4.5.3-r2 (14 Feb 2011)

  14 Feb 2011; Christoph Junghans <ottxor@gentoo.org> -gromacs-4.5.3-r1.ebuild,
  +gromacs-4.5.3-r2.ebuild, gromacs-4.5.9999.ebuild, gromacs-9999.ebuild:
  bring back sse/sse2 useflag (bug #339837)

  20 Jan 2011; Christoph Junghans <kleiner_otti@gmx.de> gromacs-9999.ebuild:
  add back live manual

  17 Jan 2011; Christoph Junghans <kleiner_otti@gmx.de> gromacs-9999.ebuild:
  QA fixes

  16 Dec 2010; Justin Lecher <jlec@gentoo.org> gromacs-4.0.9999.ebuild,
  gromacs-4.5.9999.ebuild, gromacs-9999.ebuild:
  Removal of fortran.eclass, #348851

  25 Nov 2010; Alexey Shvetsov <alexxy@gentoo.org> -gromacs-4.0.7-r5.ebuild,
  -files/gromacs-4.0.7_missing_distfiles.patch.gz,
  -files/gromacs-4.0.7_upstream2010-09-15.patch.gz, -gromacs-4.5.2.ebuild,
  -gromacs-4.5.3.ebuild:
  Moved to tree

*gromacs-4.5.3 (23 Nov 2010)

  23 Nov 2010; Christoph Junghans <kleiner_otti@gmx.de>
  +gromacs-4.5.3.ebuild:
  version bump

*gromacs-4.5.2 (30 Oct 2010)

  30 Oct 2010; Christoph Junghans <kleiner_otti@gmx.de>
  +gromacs-4.5.2.ebuild:
  Version bump

  25 Oct 2010; Christoph Junghans <kleiner_otti@gmx.de>
  gromacs-4.5.9999.ebuild, gromacs-9999.ebuild, metadata.xml:
  added natural vmd support (bug #340651#c8)

  21 Oct 2010; Christoph Junghans <kleiner_otti@gmx.de>
  gromacs-4.5.9999.ebuild, metadata.xml:
  added vmd use flag

  17 Oct 2010; Christoph Junghans <kleiner_otti@gmx.de>
  gromacs-4.0.7-r5.ebuild, gromacs-4.0.9999.ebuild:
  rename manual in distfiles

  16 Oct 2010; Christoph Junghans <kleiner_otti@gmx.de>
  gromacs-4.0.9999.ebuild, gromacs-4.5.9999.ebuild, gromacs-9999.ebuild:
  Live ebuild updates

*gromacs-4.0.7-r5 (16 Oct 2010)

  16 Oct 2010; Christoph Junghans <kleiner_otti@gmx.de>
  +gromacs-4.0.7-r5.ebuild, +files/gromacs-4.0.7_missing_distfiles.patch.gz,
  +files/gromacs-4.0.7_upstream2010-09-15.patch.gz:
  Version bump

*gromacs-4.5.1 (02 Sep 2010)

  02 Sep 2010; Christoph Junghans <kleiner_otti@gmx.de>
  -gromacs-4.5_beta3.ebuild, +gromacs-4.5.1.ebuild:
  version bump

*gromacs-4.5_beta3 (11 Aug 2010)

  11 Aug 2010; Alexey Shvetsov <alexxy@gentoo.org> gromacs-4.0.9999.ebuild,
  -gromacs-4.5_beta2.ebuild, +gromacs-4.5_beta3.ebuild,
  gromacs-4.5.9999.ebuild, gromacs-9999.ebuild:
  Add epatch_user

*gromacs-4.5_beta2 (02 Aug 2010)

  02 Aug 2010; Christoph Junghans <kleiner_otti@gmx.de>
  -gromacs-4.5_beta1.ebuild, +gromacs-4.5_beta2.ebuild,
  gromacs-4.5.9999.ebuild, gromacs-9999.ebuild:
  Version bump + new manual

*gromacs-4.5.9999 (31 Jul 2010)
*gromacs-4.5_beta1 (31 Jul 2010)

  31 Jul 2010; Christoph Junghans <kleiner_otti@gmx.de>
  +gromacs-4.5_beta1.ebuild, +gromacs-4.5.9999.ebuild, gromacs-9999.ebuild:
  Version bump

  24 Jul 2010; Alexey Shvetsov <alexxy@gentoo.org> gromacs-9999.ebuild:
  ffamber officialy shipped with gromacs from now on

  08 Jul 2010; Christoph Junghans <kleiner_otti@gmx.de>
  gromacs-4.0.9999.ebuild, gromacs-9999.ebuild:
  fix for bug #301854

  04 Jul 2010; Christoph Junghans <kleiner_otti@gmx.de>
  gromacs-4.0.9999.ebuild, -files/gromacs-4.0.9999-ccache.patch,
  -files/gromacs-4.0.9999-configure-gfortran.patch, gromacs-9999.ebuild:
  make it compile without fortran again

  04 Jul 2010; Christoph Junghans <kleiner_otti@gmx.de>
  gromacs-4.0.9999.ebuild, gromacs-9999.ebuild:
  Fixes for Bug #326331

  28 Jun 2010; Christoph Junghans <kleiner_otti@gmx.de>
  gromacs-4.0.9999.ebuild, +files/gromacs-4.0.9999-docdir.patch:
  docdir patch is still not in 4.0 branch

*gromacs-4.0.7-r3 (22 Jun 2010)

  22 Jun 2010; Christoph Junghans <kleiner_otti@gmx.de>
  +gromacs-4.0.7-r3.ebuild, +files/gromacs-4.0.7to2010-06-08.patch.gz:
  added patches from stable branch

*gromacs-4.0.7-r2 (26 Feb 2010)

  26 Feb 2010; Alexey Shvetsov <alexxy@gentoo.org> +gromacs-4.0.7-r2.ebuild:
  Add ffamber port to gromacs

  18 Feb 2010; Alexey Shvetsov <alexxy@gentoo.org> gromacs-9999.ebuild,
  -files/gromacs-9999-dirent.patch:
  Dropped unneded patches. They all were applied to git master

  18 Feb 2010; Alexey Shvetsov <alexxy@gentoo.org> gromacs-9999.ebuild,
  -files/gromacs-9999-as-needed.patch,
  -files/gromacs-9999-install-mdrun.patch:
  Dropped unneded patches. They all were applied to git master

  09 Feb 2010; Christoph Junghans <kleiner_otti@gmx.de> gromacs-9999.ebuild,
  +files/gromacs-9999-as-needed.patch:
  added as-needed fix

  06 Feb 2010; Christoph Junghans <kleiner_otti@gmx.de>
  -gromacs-4.0.7-r1.ebuild, -files/gromacs-4.0.9999-docdir.patch:
  InCvs

  06 Feb 2010; Christoph Junghans <kleiner_otti@gmx.de>
  gromacs-4.0.9999.ebuild, gromacs-9999.ebuild:
  docdir patch went upstream

  01 Feb 2010; Christoph Junghans <kleiner_otti@gmx.de> gromacs-9999.ebuild,
  +files/gromacs-9999-install-mdrun.patch:
  update live ebuild

*gromacs-4.0.7-r1 (24 Jan 2010)

  24 Jan 2010; Christoph Junghans <kleiner_otti@gmx.de>
  -files/gromacs-4.0.4-configure-gfortran.patch, +gromacs-4.0.7-r1.ebuild,
  gromacs-4.0.9999.ebuild, +files/gromacs-4.0.9999-ccache.patch,
  +files/gromacs-4.0.9999-configure-gfortran.patch, gromacs-9999.ebuild:
  Fixes bug #302048

  23 Jan 2010; Christoph Junghans <kleiner_otti@gmx.de>
  gromacs-4.0.9999.ebuild, gromacs-9999.ebuild:
  fixed --as-needed confusion

  21 Jan 2010; Christoph Junghans <kleiner_otti@gmx.de>
  -gromacs-3.3.9999.ebuild, -gromacs-4.0.4.ebuild,
  -files/gromacs-4.0.4-sparc-cyclecounter.patch, -gromacs-4.0.5-r1.ebuild,
  -files/gromacs-4.0.5-docdir.patch,
  -files/gromacs-4.0.5-path-overflow.patch, gromacs-4.0.9999.ebuild,
  +files/gromacs-4.0.9999-docdir.patch, gromacs-9999.ebuild:
  sync with tree and removed old ebuilds

  30 Nov 2009; Christoph Junghans <kleiner_otti@gmx.de>
  files/gromacs-4.0.5-docdir.patch:
  docdir -> htmldir

  30 Nov 2009; Christoph Junghans <kleiner_otti@gmx.de>
  gromacs-4.0.5-r1.ebuild, +files/gromacs-4.0.5-docdir.patch:
  htmldoc was installed in the wrong path

  22 Nov 2009; Christoph Junghans <kleiner_otti@gmx.de>
  gromacs-4.0.5-r1.ebuild:
  build mpi and non-mpi libs, enable gsl by default

*gromacs-4.0.5-r1 (14 Nov 2009)

  14 Nov 2009; Christoph Junghans <kleiner_otti@gmx.de>
  +files/gromacs-4.0.4-sparc-cyclecounter.patch, +gromacs-4.0.5-r1.ebuild,
  +files/gromacs-4.0.5-path-overflow.patch:
  fixes bug #284431

*gromacs-9999 (21 Jun 2009)
*gromacs-4.0.9999 (21 Jun 2009)
*gromacs-3.3.9999 (21 Jun 2009)

  21 Jun 2009; Christoph Junghans <kleiner_otti@gmx.de>
  +gromacs-3.3.9999.ebuild, +files/gromacs-4.0.4-configure-gfortran.patch,
  +gromacs-4.0.9999.ebuild, +gromacs-9999.ebuild, metadata.xml:
  added live ebuilds for old, stable, experimental branch

  21 Jun 2009; Christoph Junghans <kleiner_otti@gmx.de>
  gromacs-4.0.4.ebuild:
  Fixed some repoman errors

  22 Feb 2009; Jeff Gardner <je_fro@gentoo.org>
  gromacs-4.0.4.ebuild:
  Add 'append-ldflags' to facilitate building for users with --as-needed.

*gromacs-4.0.4 (20 Feb 2009)

  20 Feb 2009; Alexey Shvetsov <alexxy@gentoo.org> -gromacs-4.0.3-r1.ebuild,
  +gromacs-4.0.4.ebuild:
  Version bump\!

  20 Feb 2009; Alexey Shvetsov <alexxy@gentoo.org> gromacs-4.0.3-r1.ebuild:
  Fix typo

*gromacs-4.0.3-r1 (20 Feb 2009)

  20 Feb 2009; Alexey Shvetsov <alexxy@gentoo.org> +gromacs-4.0.3-r1.ebuild,
  -gromacs-4.0.3.ebuild:
  Add support for qm/mm with mopac7 for gromacs

*gromacs-4.0.3 (20 Jan 2009)

  20 Jan 2009; Alexey Shvetsov <alexxy@gentoo.org> -gromacs-3.3.3.ebuild,
  +gromacs-4.0.3.ebuild:
  Version bump