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# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
PYTHON_COMPAT=( python3_{8..10} )
inherit cmake python-single-r1
MY_PN="InsightToolkit"
MY_P="${MY_PN}-${PV}"
GLI_HASH="187ab99b7d42718c99e5017f0acd3900d7469bd1"
GLI_TEST_HASH="57b5d5de8d777f10f269445a"
DESCRIPTION="NLM Insight Segmentation and Registration Toolkit"
HOMEPAGE="http://www.itk.org"
SRC_URI="
https://github.com/InsightSoftwareConsortium/ITK/releases/download/v${PV}/${MY_P}.tar.gz
https://github.com/InsightSoftwareConsortium/ITKGenericLabelInterpolator/archive/${GLI_HASH}.tar.gz -> ITKGenericLabelInterpolator-${PV}.tar.gz
test? (
https://data.kitware.com/api/v1/folder/${GLI_TEST_HASH}/download -> ITKGenericLabelInterpolator_test-${PV}.zip
https://github.com/InsightSoftwareConsortium/ITK/releases/download/v${PV}/InsightData-${PV}.tar.gz
)
"
LICENSE="Apache-2.0"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="debug doc examples fftw python review test vtkglue"
RESTRICT="!test? ( test )"
# python will not work, this is a know issue upstream:
# https://github.com/InsightSoftwareConsortium/ITK/issues/1229
# https://github.com/InsightSoftwareConsortium/ITKGenericLabelInterpolator/issues/10
RDEPEND="
dev-libs/double-conversion:0=
media-libs/openjpeg:2
media-libs/libpng:0=
media-libs/tiff:0=
sci-libs/dcmtk:0=
sci-libs/hdf5:0=[cxx]
sys-libs/zlib:0=
media-libs/libjpeg-turbo:0=
fftw? ( sci-libs/fftw:3.0= )
vtkglue? ( sci-libs/vtk:0=[rendering,python?] )
python? ( ${PYTHON_DEPS} )
"
DEPEND="${RDEPEND}
sys-apps/coreutils
python? (
>=dev-lang/swig-2.0:0
dev-cpp/castxml
)
doc? ( app-doc/doxygen )
"
BDEPEND="app-arch/unzip"
REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
S="${WORKDIR}/${MY_P}"
PATCHES=(
"${FILESDIR}"/ITKModuleRemote.patch
"${FILESDIR}"/tests.patch
)
pkg_pretend() {
if [[ -z ${ITK_COMPUTER_MEMORY_SIZE} ]]; then
elog "To tune ITK to make the best use of working memory you can set"
elog " ITK_COMPUTER_MEMORY_SIZE=XX"
elog "in make.conf, default is 1 (unit is GB)"
fi
if use python && [[ -z ${ITK_WRAP_DIMS} ]]; then
elog "For Python language bindings, you can define the dimensions"
elog "you want to create bindings for by setting"
elog " ITK_WRAP_DIMS=X;Y;Z..."
elog "in make.conf, default is 2;3 for 2D and 3D data"
fi
}
src_prepare() {
sed -i -e "s/find_package(OpenJPEG 2.0.0/find_package(OpenJPEG/g"\
Modules/ThirdParty/GDCM/src/gdcm/CMakeLists.txt
ln -sr ../ITKGenericLabelInterpolator-* Modules/Remote/ITKGenericLabelInterpolator || die
if use test; then
for filename in ../GenericLabelInterpolator/test/*/*mha; do
MD5=$(md5sum $filename) || die
MD5=${MD5% *} || die
cp "$filename" ".ExternalData/MD5/${MD5}" || die
done
fi
cmake_src_prepare
}
src_configure() {
local mycmakeargs=(
-DBUILD_SHARED_LIBS=ON
-DGDCM_USE_SYSTEM_OPENJPEG=ON
-DITK_FORBID_DOWNLOADS:BOOL=OFF
-DITK_USE_SYSTEM_DCMTK=ON
-DITK_USE_SYSTEM_DOUBLECONVERSION=ON
-DITK_USE_SYSTEM_CASTXML=ON
-DITK_USE_SYSTEM_HDF5=ON
-DITK_USE_SYSTEM_JPEG=ON
-DITK_USE_SYSTEM_PNG=ON
-DITK_USE_SYSTEM_SWIG=ON
-DITK_USE_SYSTEM_TIFF=ON
-DITK_USE_SYSTEM_ZLIB=ON
-DITK_USE_KWSTYLE=OFF
-DITK_BUILD_DEFAULT_MODULES=ON
-DITK_COMPUTER_MEMORY_SIZE="${ITK_COMPUTER_MEMORY_SIZE:-1}"
-DWRAP_ITK_JAVA=OFF
-DWRAP_ITK_TCL=OFF
-Ddouble-conversion_INCLUDE_DIRS="${EPREFIX}/usr/include/double-conversion"
-DExternalData_OBJECT_STORES="${WORKDIR}/InsightToolkit-${PV}/.ExternalData"
-DModule_GenericLabelInterpolator:BOOL=ON
-DModule_ITKReview:BOOL=ON
-DBUILD_TESTING="$(usex test ON OFF)"
-DBUILD_EXAMPLES="$(usex examples ON OFF)"
-DITK_USE_REVIEW="$(usex review ON OFF)"
-DITK_BUILD_DOCUMENTATION="$(usex doc ON OFF)"
-DITK_INSTALL_LIBRARY_DIR=$(get_libdir)
)
if use fftw; then
mycmakeargs+=(
-DUSE_FFTWD=ON
-DUSE_FFTWF=ON
-DUSE_SYSTEM_FFTW=ON
-DITK_WRAP_double=ON
-DITK_WRAP_vector_double=ON
-DITK_WRAP_covariant_vector_double=ON
-DITK_WRAP_complex_double=ON
)
fi
if use vtkglue; then
mycmakeargs+=(
-DModule_ITKVtkGlue=ON
)
fi
if use python; then
mycmakeargs+=(
-DITK_WRAP_PYTHON=ON
-DITK_WRAP_DIMS="${ITK_WRAP_DIMS:-2;3}"
)
else
mycmakeargs+=(
-DITK_WRAP_PYTHON=OFF
)
fi
cmake_src_configure
}
src_install() {
cmake_src_install
if use examples; then
docinto examples
docompress -x /usr/share/doc/${PF}/examples
dodoc -r "${S}"/Examples/*
fi
echo "ITK_DATA_ROOT=${EPREFIX}/usr/share/${PN}/data" > ${T}/40${PN}
local ldpath="${EPREFIX}/usr/$(get_libdir)/InsightToolkit"
if use python; then
echo "PYTHONPATH=${EPREFIX}/usr/$(get_libdir)/InsightToolkit/WrapITK/Python" >> "${T}"/40${PN}
ldpath="${ldpath}:${EPREFIX}/usr/$(get_libdir)/InsightToolkit/WrapITK/lib"
fi
echo "LDPATH=${ldpath}" >> "${T}"/40${PN}
doenvd "${T}"/40${PN}
if use doc; then
cd "${WORKDIR}"/html || die
rm *.md5 || die "Failed to remove superfluous hashes"
einfo "Installing API docs. This may take some time."
docinto api-docs
dodoc -r *
fi
}
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