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# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
inherit autotools git-r3
DESCRIPTION="Library for biobambam2"
HOMEPAGE="https://github.com/gt1/libmaus"
EGIT_REPO_URI="https://github.com/gt1/libmaus2.git"
LICENSE="GPL-3" # BUG: a mix of licenses, see AUTHORS
SLOT="0"
KEYWORDS=""
IUSE="cpu_flags_x86_ssse3 cpu_flags_x86_sse4_1 cpu_flags_x86_sse4_2"
DEPEND="
!sci-libs/libmaus
sci-libs/io_lib
app-arch/snappy
sci-biology/seqan
sci-libs/fftw
sci-libs/hdf5
net-libs/gnutls
dev-libs/nettle"
# --with-daligner
# --with-irods
src_prepare() {
eautoreconf
eapply_user
}
src_configure(){
local CONFIG_OPTS
use cpu_flags_x86_ssse3 && CONFIG_OPTS+=( --enable-ssse3 )
( use cpu_flags_x86_sse4_1 || use cpu_flags_x86_sse4_2 ) && CONFIG_OPTS+=( --enable-sse4 )
econf --with-snappy --with-seqan --with-io_lib $CONFIG_OPTS \
--with-lzma --with-gnutls --with-nettle --with-hdf5 --with-gmp --with-fftw
}
pkg_postinst(){
einfo "The io_lib, snappy and seqan dependencies are not strictly needed"
einfo "but were forced for optimal libmaus2 performance."
}
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