sci-biology/tgi-tools: add pvm use flag, install docs

svn path=/sunrise/; revision=2282

3 files changed, 18 insertions, 13 deletions

diff --git a/sci-biology/tgi-tools/ChangeLog b/sci-biology/tgi-tools/ChangeLog
index 939a1ea92..1ef5e7ffb 100644
--- a/sci-biology/tgi-tools/ChangeLog
+++ b/sci-biology/tgi-tools/ChangeLog
@@ -3,6 +3,10 @@
 # $Header: $
 
   12 Dec 2006; Andrei K. (azazello) <gentoo@horizon.ath.cx>
+  tgi-tools-0.1.ebuild:
+  add pvm use flag, install docs
+
+  12 Dec 2006; Andrei K. (azazello) <gentoo@horizon.ath.cx>
   +tgi-tools-0.1.ebuild, +metadata.xml:
   New ebuild, see http://bugs.gentoo.org/show_bug.cgi?id=157827
 
diff --git a/sci-biology/tgi-tools/Manifest b/sci-biology/tgi-tools/Manifest
index 35b85b030..707071de4 100644
--- a/sci-biology/tgi-tools/Manifest
+++ b/sci-biology/tgi-tools/Manifest
@@ -9,14 +9,14 @@ DIST tclust.tar.gz 8864 RMD160 e77a8ce86fa779bbce7c46efbce2245ec7735681 SHA1 357
 DIST tgi_cpp_library.tar.gz 58212 RMD160 a85d0e0232a3956f93e521a73075d81d5ecfaaf3 SHA1 1039291f5f0ca617d025bcfacf4f271a3a225001 SHA256 555a81a63233d725868f6179cf3f5d74cceaa040058e2e4ded20f95487c89875
 DIST trimpoly.tar.gz 12562 RMD160 7345812dbbcea3d7fd2018ba1b04254863d171a4 SHA1 3558e9663cba6e6c179ca6f9a019f95d7aa1d4db SHA256 aa8f4a47d45ee534a15edf8e325f341a72d0ce0fa659ccfd8591c15bef44da4f
 DIST zmsort.tar.gz 5537 RMD160 cf6599dbd417f5ea50ec41db7909a2415ac28e68 SHA1 27a88033d99da8671fcae598f21e5b8cb7089e40 SHA256 32c5b72e22ae0fbd1784174dcff74e1a40817e29e98b2a0a32a21d83ace6b7fd
-EBUILD tgi-tools-0.1.ebuild 1431 RMD160 c8726e6dc89254252c9e63af2a944bec51828b28 SHA1 aca3ec617c21b1e127cdf6cf903d09d85e6d00f6 SHA256 942c95b0ec7ed03d4099ccdcd6942e5729323a2ee8f334f6cc752a52999056d6
-MD5 90bf9ef5f63bbcf79be97689d2b0a516 tgi-tools-0.1.ebuild 1431
-RMD160 c8726e6dc89254252c9e63af2a944bec51828b28 tgi-tools-0.1.ebuild 1431
-SHA256 942c95b0ec7ed03d4099ccdcd6942e5729323a2ee8f334f6cc752a52999056d6 tgi-tools-0.1.ebuild 1431
-MISC ChangeLog 287 RMD160 5d4be70c6f1eb443b45881c67491691293754ff4 SHA1 45407e28c9d0f316a1b0664567fda6865a72de2a SHA256 a869b9d68a11d2958438028c05042bfc3409c1bd82b945d9ac9431eee22bfd69
-MD5 33b104f9a53887bb6d404ae7f4bff882 ChangeLog 287
-RMD160 5d4be70c6f1eb443b45881c67491691293754ff4 ChangeLog 287
-SHA256 a869b9d68a11d2958438028c05042bfc3409c1bd82b945d9ac9431eee22bfd69 ChangeLog 287
+EBUILD tgi-tools-0.1.ebuild 1567 RMD160 9039ca14fcfb600e11ba46f2e0f5f410f4021af9 SHA1 b9715dc411512d9832433411e91dda02ff8e5554 SHA256 5a7b9a5beedc1eb44a98c5329ca38526baaf6ad5299d55d8d120f8bc0394b519
+MD5 61b7a81382df690a1e1f60dde85710ee tgi-tools-0.1.ebuild 1567
+RMD160 9039ca14fcfb600e11ba46f2e0f5f410f4021af9 tgi-tools-0.1.ebuild 1567
+SHA256 5a7b9a5beedc1eb44a98c5329ca38526baaf6ad5299d55d8d120f8bc0394b519 tgi-tools-0.1.ebuild 1567
+MISC ChangeLog 405 RMD160 6612d532ce3afc63f8d1be37f5dceba5c221975c SHA1 62c0af381287ebbafca34c9772f461b7aaf6c5db SHA256 307dc4a0a152bf298ea650f0e52740629e11094b5e70d6ae30e5d8e6245d0ec4
+MD5 21f7e1aa29102788be68dd9780efc1a4 ChangeLog 405
+RMD160 6612d532ce3afc63f8d1be37f5dceba5c221975c ChangeLog 405
+SHA256 307dc4a0a152bf298ea650f0e52740629e11094b5e70d6ae30e5d8e6245d0ec4 ChangeLog 405
 MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42
 MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170
 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170
diff --git a/sci-biology/tgi-tools/tgi-tools-0.1.ebuild b/sci-biology/tgi-tools/tgi-tools-0.1.ebuild
index 0471acb20..97b4a4a73 100644
--- a/sci-biology/tgi-tools/tgi-tools-0.1.ebuild
+++ b/sci-biology/tgi-tools/tgi-tools-0.1.ebuild
@@ -8,7 +8,7 @@ DESCRIPTION="The Gene Index Project utilities for genomic data processing: seqcl
 LICENSE="Artistic"
 HOMEPAGE="http://compbio.dfci.harvard.edu/tgi/software/"
 SLOT="0"
-IUSE=""
+IUSE="pvm"
 KEYWORDS="~x86"
 
 for i in seqclean/{seqclean,mdust,trimpoly} cdbfasta/cdbfasta tgicl/{psx,pvmsx,zmsort,tclust,sclust,nrcl,tgi_cpp_library}; do
@@ -17,7 +17,7 @@ done
 
 RESTRICT="nomirror"
 
-DEPEND=""
+DEPEND="pvm? ( sys-cluster/pvm )"
 RDEPEND=${DEPEND}
 S=${WORKDIR}
 
@@ -31,8 +31,8 @@ src_unpack() {
 src_compile() {
 	sed -i 's/use Mailer;/#use Mailer;/' ${S}/seqclean/seqclean
 	sed -i 's/-V\t\tverbose/-V\t\tverbose\\/' ${S}/zmsort/zmsort.cpp
-	# TODO: fix errors in nrcl, pvmsx
-	for i in cdbfasta mdust psx sclust tclust trimpoly zmsort; do
+	# TODO: fix error in nrcl
+	for i in cdbfasta mdust psx sclust tclust trimpoly zmsort `use pvm && echo pvmsx`; do
 		sed -i 's/CFLAGS[ ]*=/CFLAGS :=/; s/-D_REENTRANT/-D_REENTRANT \${CFLAGS}/; s/CFLAGS[ ]*:=[ ]*-O2$//' ${S}/${i}/Makefile
 		(cd ${S}/${i}; emake) || die
 	done
@@ -40,5 +40,6 @@ src_compile() {
 
 src_install() {
 	dobin cdbfasta/{cdbfasta,cdbyank} seqclean/{seqclean,cln2qual,bin/seqclean.psx}
-	for i in mdust psx sclust tclust trimpoly zmsort; do dobin ${i}/${i}; done
+	for i in mdust psx sclust tclust trimpoly zmsort `use pvm && echo pvmsx`; do dobin ${i}/${i}; done
+	for i in cdbfasta seqclean; do newdoc ${i}/README README.${i}; done
 }