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authorazazello <gentoo@horizon.ath.cx>2008-01-18 17:59:19 +0000
committerazazello <gentoo@horizon.ath.cx>2008-01-18 17:59:19 +0000
commitfa6017df31707d1a30eacb3b1d5b7c613686070d (patch)
treecc8028afe561ceecbef96638087b18a8e7042179 /sci-biology/twinscan
parentRemoved parafoam USE flag for sci-libs/openfoam-bin (diff)
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sci-biology/twinscan: New package twinscan, bug 154939
svn path=/sunrise/; revision=5457
Diffstat (limited to 'sci-biology/twinscan')
-rw-r--r--sci-biology/twinscan/ChangeLog8
-rw-r--r--sci-biology/twinscan/Manifest4
-rw-r--r--sci-biology/twinscan/metadata.xml5
-rw-r--r--sci-biology/twinscan/twinscan-4.1.2.ebuild30
4 files changed, 47 insertions, 0 deletions
diff --git a/sci-biology/twinscan/ChangeLog b/sci-biology/twinscan/ChangeLog
new file mode 100644
index 000000000..67a7c6c3c
--- /dev/null
+++ b/sci-biology/twinscan/ChangeLog
@@ -0,0 +1,8 @@
+# ChangeLog for sci-biology/twinscan
+# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+ 18 Jan 2008; azazello <gentoo@horizon.ath.cx> +metadata.xml,
+ +twinscan-4.1.2.ebuild:
+ New package twinscan, bug 154939
+
diff --git a/sci-biology/twinscan/Manifest b/sci-biology/twinscan/Manifest
new file mode 100644
index 000000000..5fa2df74f
--- /dev/null
+++ b/sci-biology/twinscan/Manifest
@@ -0,0 +1,4 @@
+DIST iscan-4.1.2.tar_.gz 5894833 RMD160 80cd142ae9cbd44c8d582eac5c13113702c77769 SHA1 86a67f78aba51d4deccdf5583936dd8853c615ff SHA256 30c7e980b2ccbba22a5e2d7ff0d7c1aaeb610cc1cec81432bb30e87f03f7e56a
+EBUILD twinscan-4.1.2.ebuild 741 RMD160 74fbc29c195afa0641e0266f6f7a2179747c5640 SHA1 c92a1962663b267b811d1ae96c5fc8f85b731722 SHA256 a3917c987efbf643b87adfa909e96b82c8de49680f507db1d6e3f81aec3931e1
+MISC ChangeLog 246 RMD160 dc8514be54fd4b4e8dd37118dca71190cebff71f SHA1 7f40078e1449d0d7aa17aac1f21d9924c872c52d SHA256 3496a3947a48a6109ea9d87e372a09e665b0c163a678825c38a53ed83cc3afd9
+MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42
diff --git a/sci-biology/twinscan/metadata.xml b/sci-biology/twinscan/metadata.xml
new file mode 100644
index 000000000..7e3286984
--- /dev/null
+++ b/sci-biology/twinscan/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>maintainer-wanted</herd>
+</pkgmetadata>
diff --git a/sci-biology/twinscan/twinscan-4.1.2.ebuild b/sci-biology/twinscan/twinscan-4.1.2.ebuild
new file mode 100644
index 000000000..4d48fe293
--- /dev/null
+++ b/sci-biology/twinscan/twinscan-4.1.2.ebuild
@@ -0,0 +1,30 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+DESCRIPTION="A gene structure prediction pipeline"
+LICENSE="as-is"
+HOMEPAGE="http://mblab.wustl.edu/software/twinscan"
+SLOT="0"
+IUSE=""
+KEYWORDS="~x86"
+SRC_URI="http://mblab.wustl.edu/software/download/iscan-${PV}.tar_.gz"
+
+S="${WORKDIR}/N-SCAN"
+
+RDEPEND="sci-biology/repeatmasker"
+
+src_unpack() {
+ unpack ${A}
+ tar -C "${WORKDIR}" -xf iscan-${PV}.tar_
+ sed -i "s|\(use strict;\)|\1\nuse lib \"/usr/share/${PN}/lib/perl5\";|" "${S}"/bin/*.pl || die
+}
+
+src_install() {
+ dobin "${S}/bin/iscan"
+ dobin "${S}/bin/"*".pl"
+ insinto /usr/share/${PN}
+ doins -r "${S}/parameters"
+ doins -r "${S}/lib"
+ dodoc examples/* README*
+}