diff options
| -rw-r--r-- | sci-biology/clover/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/clover/Manifest | 17 | ||||
| -rw-r--r-- | sci-biology/clover/clover-2006.07.17.ebuild | 43 | ||||
| -rw-r--r-- | sci-biology/clover/files/digest-clover-2006.07.17 | 6 | ||||
| -rw-r--r-- | sci-biology/clover/metadata.xml | 5 |
5 files changed, 79 insertions, 0 deletions
diff --git a/sci-biology/clover/ChangeLog b/sci-biology/clover/ChangeLog new file mode 100644 index 000000000..45e17d614 --- /dev/null +++ b/sci-biology/clover/ChangeLog @@ -0,0 +1,8 @@ +# ChangeLog for sci-biology/clover +# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + + 15 Mar 2007; AK <gentoo@horizon.ath.cx> +clover-2006.07.17.ebuild, + +metadata.xml: + new package (bug 142269) + diff --git a/sci-biology/clover/Manifest b/sci-biology/clover/Manifest new file mode 100644 index 000000000..355782c14 --- /dev/null +++ b/sci-biology/clover/Manifest @@ -0,0 +1,17 @@ +DIST clover-2006-07-17.tar.gz 15610 RMD160 e7f5c2b53afef2df292f9274b2a1ce2c1fbbc0c3 SHA1 f80b528ceb9833d0465b1196ae793c5364a87109 SHA256 e7b5b9fa8a341d49d9cf79a6d03ef0677a493f0c34a9a2f466a864575af91cb9 +DIST jaspar2005core 14913 RMD160 6fe43472cc1a2e0389ad9290801db56488773d3e SHA1 be8cdff62cf35f430c0c17f53564529b08000c9c SHA256 498a560c67411789106b50ccdfd9bc41f571d77c2fe9bfba7e95128c0a122fe4 +EBUILD clover-2006.07.17.ebuild 1059 RMD160 968519d9c6c17d29102ae9b6465acfe3812bcae7 SHA1 873e0f380eac7567ef3c2f9ee29fbc619a31fc4f SHA256 0ed8a75004280210ccd56dfb5c510bca400ece76cddbe3728ea3674f52387bd6 +MD5 1509c4396358a7c57ced969757f1eb1e clover-2006.07.17.ebuild 1059 +RMD160 968519d9c6c17d29102ae9b6465acfe3812bcae7 clover-2006.07.17.ebuild 1059 +SHA256 0ed8a75004280210ccd56dfb5c510bca400ece76cddbe3728ea3674f52387bd6 clover-2006.07.17.ebuild 1059 +MISC ChangeLog 233 RMD160 57d369f4ef428cbe77d625e89c21167ef0519166 SHA1 d7a9958d9523c9c5134e2f4b3196a114c4e0c599 SHA256 9e2831ba3cdc43db68aafa656f9b533aa4a5d3c81d8bd71438135ade7a799293 +MD5 7ffea1525a9a4b528e3b2debc5c5f8d3 ChangeLog 233 +RMD160 57d369f4ef428cbe77d625e89c21167ef0519166 ChangeLog 233 +SHA256 9e2831ba3cdc43db68aafa656f9b533aa4a5d3c81d8bd71438135ade7a799293 ChangeLog 233 +MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 +MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170 +RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170 +SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170 +MD5 2fd761a79ad477d120b354d1a5a9baab files/digest-clover-2006.07.17 470 +RMD160 19c7bb7d36860924f2b707673290c6dd8e2d7a3a files/digest-clover-2006.07.17 470 +SHA256 d95bafedeabe12831000becf898ee985b95ff83e269e3d5ee39506fe1287a0d4 files/digest-clover-2006.07.17 470 diff --git a/sci-biology/clover/clover-2006.07.17.ebuild b/sci-biology/clover/clover-2006.07.17.ebuild new file mode 100644 index 000000000..4cf143b0f --- /dev/null +++ b/sci-biology/clover/clover-2006.07.17.ebuild @@ -0,0 +1,43 @@ +# Copyright 1999-2007 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +inherit versionator toolchain-funcs + +MY_PV=$(replace_all_version_separators '-') + +DESCRIPTION="Cis-eLement OVERrepresentation: Detection of functional DNA motifs" +HOMEPAGE="http://zlab.bu.edu/clover/" +SRC_URI="http://zlab.bu.edu/~mfrith/downloads/${PN}-${MY_PV}.tar.gz http://zlab.bu.edu/clover/jaspar2005core" + +LICENSE="as-is" +SLOT="0" +IUSE="" +KEYWORDS="~x86" + +DEPEND="" +RDEPEND="" + +S="${WORKDIR}/${PN}-${MY_PV}" + +src_unpack() { + unpack ${PN}-${MY_PV}.tar.gz +} + +src_compile() { + sed -i "s:g++:$(tc-getCXX):; s:-Wall -O3:${CFLAGS}:" Makefile || die "sed failed" + emake || die "emake failed" +} + +src_install() { + dobin clover + dodir "/usr/share/${PN}" + insinto "/usr/share/${PN}" + doins ${DISTDIR}/jaspar2005core || die +} + +pkg_postinst() { + einfo "The motif library jaspar2005core has been installed in" + einfo " /usr/share/clover/jaspar2005core" + einfo "You can pass this library to clover for motif search, or use your own library." +} diff --git a/sci-biology/clover/files/digest-clover-2006.07.17 b/sci-biology/clover/files/digest-clover-2006.07.17 new file mode 100644 index 000000000..c407197a6 --- /dev/null +++ b/sci-biology/clover/files/digest-clover-2006.07.17 @@ -0,0 +1,6 @@ +MD5 d0911be5da7d75164cb2d67f5d3f280d clover-2006-07-17.tar.gz 15610 +RMD160 e7f5c2b53afef2df292f9274b2a1ce2c1fbbc0c3 clover-2006-07-17.tar.gz 15610 +SHA256 e7b5b9fa8a341d49d9cf79a6d03ef0677a493f0c34a9a2f466a864575af91cb9 clover-2006-07-17.tar.gz 15610 +MD5 ab02ff3b3b4e79239d9176de9bda5e96 jaspar2005core 14913 +RMD160 6fe43472cc1a2e0389ad9290801db56488773d3e jaspar2005core 14913 +SHA256 498a560c67411789106b50ccdfd9bc41f571d77c2fe9bfba7e95128c0a122fe4 jaspar2005core 14913 diff --git a/sci-biology/clover/metadata.xml b/sci-biology/clover/metadata.xml new file mode 100644 index 000000000..7e3286984 --- /dev/null +++ b/sci-biology/clover/metadata.xml @@ -0,0 +1,5 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>maintainer-wanted</herd> +</pkgmetadata> |