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Diffstat (limited to 'sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild')
| -rw-r--r-- | sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild | 44 |
1 files changed, 0 insertions, 44 deletions
diff --git a/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild b/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild deleted file mode 100644 index 636cbbd66..000000000 --- a/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild +++ /dev/null @@ -1,44 +0,0 @@ -# Copyright 1999-2008 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -MY_PN="GlimmerHMM" - -DESCRIPTION="An eukaryotic gene finding system from TIGR" -HOMEPAGE="http://www.cbcb.umd.edu/software/GlimmerHMM/" -SRC_URI="ftp://ftp.cbcb.umd.edu/pub/software/glimmerhmm/${MY_PN}-${PV}.tar.gz" - -LICENSE="Artistic" -SLOT="0" -IUSE="" -KEYWORDS="~x86" - -DEPEND="" -RDEPEND="" - -S=${WORKDIR}/${MY_PN} - -src_compile() { - sed -i -e 's|\(my $scriptdir=\)$FindBin::Bin|\1"/usr/share/'${PN}'/training_utils"|' \ - -e 's|\(use lib\) $FindBin::Bin|\1 "/usr/share/'${PN}'/lib"|' train/trainGlimmerHMM || die "sed failed" - sed -i 's/^CFLAGS[ ]*=.*//' */makefile - - cd sources - emake || die "emake failed in sources" - cd "${S}/train" || die "failed to cd" - emake || die "emake failed in train" -} - -src_install() { - dobin sources/glimmerhmm train/trainGlimmerHMM - - insinto /usr/share/${PN}/lib - doins train/*.pm - insinto /usr/share/${PN}/models - doins -r trained_dir/* - insinto /usr/share/${PN}/training_utils - insopts -m755 - doins train/{build{1,2,-icm,-icm-noframe},erfapp,falsecomp,findsites,karlin,score,score{2,ATG,ATG2,STOP,STOP2},splicescore} - - dodoc README.first train/readme.train -} |