1 files changed, 0 insertions, 51 deletions
diff --git a/sci-biology/tgi-tools/tgi-tools-0.1.ebuild b/sci-biology/tgi-tools/tgi-tools-0.1.ebuild
deleted file mode 100644
index 8e9b2fb37..000000000
--- a/sci-biology/tgi-tools/tgi-tools-0.1.ebuild
+++ /dev/null
@@ -1,51 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-DESCRIPTION="The Gene Index Project utilities for genomic data processing: seqclean, cdbfasta, psx"
-HOMEPAGE="http://compbio.dfci.harvard.edu/tgi/software/"
-
-for i in seqclean/{seqclean,mdust,trimpoly} cdbfasta/cdbfasta tgicl/{psx,pvmsx,zmsort,tclust,sclust,nrcl,tgi_cpp_library}; do
-	SRC_URI="${SRC_URI} ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/${i}.tar.gz"
-done
-
-LICENSE="Artistic"
-SLOT="0"
-IUSE="pvm"
-KEYWORDS="~x86"
-
-DEPEND="pvm? ( sys-cluster/pvm )"
-RDEPEND="${DEPEND}"
-
-S=${WORKDIR}
-
-src_unpack() {
-	unpack {seqclean,mdust,trimpoly,cdbfasta,tgi_cpp_library}.tar.gz
-	for i in nrcl sclust tclust zmsort psx pvmsx; do
-		mkdir "${S}"/${i}
-		cd "${S}"/${i}
-		unpack ${i}.tar.gz
-	done
-}
-
-src_compile() {
-	sed -i 's/use Mailer;/#use Mailer;/' seqclean/seqclean
-	sed -i 's/-V\t\tverbose/-V\t\tverbose\\/' zmsort/zmsort.cpp
-	# TODO: fix error in nrcl
-	for i in cdbfasta mdust psx sclust tclust trimpoly zmsort $(use pvm && echo pvmsx); do
-		sed -i 's/CFLAGS[ ]*=/CFLAGS :=/; s/-D_REENTRANT/-D_REENTRANT \${CFLAGS}/; s/CFLAGS[ ]*:=[ ]*-O2$//' \
-			${i}/Makefile
-		cd "${S}/${i}" || die "cd ${i} failed"
-		emake || die "emake failed in ${i}"
-	done
-}
-
-src_install() {
-	dobin cdbfasta/{cdbfasta,cdbyank} seqclean/{seqclean,cln2qual,bin/seqclean.psx}
-	for i in mdust psx sclust tclust trimpoly zmsort $(use pvm && echo pvmsx); do
-		dobin ${i}/${i}
-	done
-	for i in cdbfasta seqclean; do
-		newdoc ${i}/README README.${i}
-	done
-}