diff options
Diffstat (limited to 'sci-biology/tigr-assembler')
-rw-r--r-- | sci-biology/tigr-assembler/ChangeLog | 8 | ||||
-rw-r--r-- | sci-biology/tigr-assembler/Manifest | 16 | ||||
-rw-r--r-- | sci-biology/tigr-assembler/files/digest-tigr-assembler-2.0 | 3 | ||||
-rw-r--r-- | sci-biology/tigr-assembler/metadata.xml | 5 | ||||
-rw-r--r-- | sci-biology/tigr-assembler/tigr-assembler-2.0.ebuild | 28 |
5 files changed, 60 insertions, 0 deletions
diff --git a/sci-biology/tigr-assembler/ChangeLog b/sci-biology/tigr-assembler/ChangeLog new file mode 100644 index 000000000..2ebe54fe7 --- /dev/null +++ b/sci-biology/tigr-assembler/ChangeLog @@ -0,0 +1,8 @@ +# ChangeLog for sci-biology/tigr-assembler +# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + + 19 Apr 2007; AK <gentoo@horizon.ath.cx> +tigr-assembler-2.0.ebuild, + +metadata.xml: + new package (bug 175282) + diff --git a/sci-biology/tigr-assembler/Manifest b/sci-biology/tigr-assembler/Manifest new file mode 100644 index 000000000..ff2a6408a --- /dev/null +++ b/sci-biology/tigr-assembler/Manifest @@ -0,0 +1,16 @@ +DIST TIGR_Assembler_v2.tar.gz 3252950 RMD160 5b7eaeebf8791acb3b53ab864f6e9c6571c70877 SHA1 8bd1886eb33d203598ac03decc7798a1fa0d85d7 SHA256 b5b660db388788173f7bd9778fe9b1e904bed7f6a464ab6cc92cd4608e70fd42 +EBUILD tigr-assembler-2.0.ebuild 613 RMD160 eebd4f86c8766c5e09e7d3f7cb96d6d8f93786dc SHA1 20308417edeb46b0df768d68494d352a1c938f55 SHA256 2aca01cc8546f22ec76d96cb8235d381cd09dfbf639b5742e5473a2f9bd137aa +MD5 95f9ca343ace36d10719b2f7a92bd69d tigr-assembler-2.0.ebuild 613 +RMD160 eebd4f86c8766c5e09e7d3f7cb96d6d8f93786dc tigr-assembler-2.0.ebuild 613 +SHA256 2aca01cc8546f22ec76d96cb8235d381cd09dfbf639b5742e5473a2f9bd137aa tigr-assembler-2.0.ebuild 613 +MISC ChangeLog 242 RMD160 ee8f9f7656248cde243f1debe12147d01385dc43 SHA1 a418c094a3784062c1895a5cf1344edbc209c6e3 SHA256 f6d763d7734596309fa10ad8df569d866c62a1f0f572c38fe2a06db6be044b3c +MD5 1b3552b6ca9ca0b5bf88def285a5925f ChangeLog 242 +RMD160 ee8f9f7656248cde243f1debe12147d01385dc43 ChangeLog 242 +SHA256 f6d763d7734596309fa10ad8df569d866c62a1f0f572c38fe2a06db6be044b3c ChangeLog 242 +MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 +MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170 +RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170 +SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170 +MD5 34ea976ee140a76384b08b8d33f832b0 files/digest-tigr-assembler-2.0 256 +RMD160 88adcd5f128ee53e27bef0bfef88f7e45e11344d files/digest-tigr-assembler-2.0 256 +SHA256 240d7e7304c146d042614059a62e89a5a4911483cba0c8895731f1aadbcffdf2 files/digest-tigr-assembler-2.0 256 diff --git a/sci-biology/tigr-assembler/files/digest-tigr-assembler-2.0 b/sci-biology/tigr-assembler/files/digest-tigr-assembler-2.0 new file mode 100644 index 000000000..738d485c7 --- /dev/null +++ b/sci-biology/tigr-assembler/files/digest-tigr-assembler-2.0 @@ -0,0 +1,3 @@ +MD5 70b56f15fc9e44436abf67ca8ba909fa TIGR_Assembler_v2.tar.gz 3252950 +RMD160 5b7eaeebf8791acb3b53ab864f6e9c6571c70877 TIGR_Assembler_v2.tar.gz 3252950 +SHA256 b5b660db388788173f7bd9778fe9b1e904bed7f6a464ab6cc92cd4608e70fd42 TIGR_Assembler_v2.tar.gz 3252950 diff --git a/sci-biology/tigr-assembler/metadata.xml b/sci-biology/tigr-assembler/metadata.xml new file mode 100644 index 000000000..7e3286984 --- /dev/null +++ b/sci-biology/tigr-assembler/metadata.xml @@ -0,0 +1,5 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>maintainer-wanted</herd> +</pkgmetadata> diff --git a/sci-biology/tigr-assembler/tigr-assembler-2.0.ebuild b/sci-biology/tigr-assembler/tigr-assembler-2.0.ebuild new file mode 100644 index 000000000..5a8746be6 --- /dev/null +++ b/sci-biology/tigr-assembler/tigr-assembler-2.0.ebuild @@ -0,0 +1,28 @@ +# Copyright 1999-2007 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +DESCRIPTION="Whole-genome shotgun assembler from TIGR" +HOMEPAGE="http://www.tigr.org/software/assembler/" +SRC_URI="ftp://ftp.tigr.org/pub/software/assembler/TIGR_Assembler_v2.tar.gz" + +LICENSE="Artistic" +SLOT="0" +IUSE="" +KEYWORDS="~x86" + +DEPEND="" +RDEPEND="" + +S="${WORKDIR}/TIGR_Assembler_v2" + +src_compile() { + sed -i 's/CFLAGS = -O/CFLAGS := -O ${CFLAGS}/' "${S}/src/Makefile" + cd "${S}/src" + emake || die "emake failed" +} + +src_install() { + dobin bin/{run_TA,TIGR_Assembler} + dodoc README +} |