diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/tgi-tools/ChangeLog | 4 | ||||
| -rw-r--r-- | sci-biology/tgi-tools/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/tgi-tools/tgi-tools-0.1.ebuild | 7 |
3 files changed, 10 insertions, 5 deletions
diff --git a/sci-biology/tgi-tools/ChangeLog b/sci-biology/tgi-tools/ChangeLog index 01a058e0f..4f1e16447 100644 --- a/sci-biology/tgi-tools/ChangeLog +++ b/sci-biology/tgi-tools/ChangeLog @@ -2,6 +2,10 @@ # Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 26 Oct 2007; Charlie Shepherd <masterdriverz@gentoo.org> + tgi-tools-0.1.ebuild: + Remove extraneous $S from paths in src_compile to shut up repoman. + 12 Jul 2007; David Shakaryan <omp@gentoo.org> tgi-tools-0.1.ebuild: Place $S in quotes. diff --git a/sci-biology/tgi-tools/Manifest b/sci-biology/tgi-tools/Manifest index 5575b1aaa..7b795083b 100644 --- a/sci-biology/tgi-tools/Manifest +++ b/sci-biology/tgi-tools/Manifest @@ -9,6 +9,6 @@ DIST tclust.tar.gz 8864 RMD160 e77a8ce86fa779bbce7c46efbce2245ec7735681 SHA1 357 DIST tgi_cpp_library.tar.gz 58212 RMD160 a85d0e0232a3956f93e521a73075d81d5ecfaaf3 SHA1 1039291f5f0ca617d025bcfacf4f271a3a225001 SHA256 555a81a63233d725868f6179cf3f5d74cceaa040058e2e4ded20f95487c89875 DIST trimpoly.tar.gz 12562 RMD160 7345812dbbcea3d7fd2018ba1b04254863d171a4 SHA1 3558e9663cba6e6c179ca6f9a019f95d7aa1d4db SHA256 aa8f4a47d45ee534a15edf8e325f341a72d0ce0fa659ccfd8591c15bef44da4f DIST zmsort.tar.gz 5537 RMD160 cf6599dbd417f5ea50ec41db7909a2415ac28e68 SHA1 27a88033d99da8671fcae598f21e5b8cb7089e40 SHA256 32c5b72e22ae0fbd1784174dcff74e1a40817e29e98b2a0a32a21d83ace6b7fd -EBUILD tgi-tools-0.1.ebuild 1560 RMD160 9810afbc537469278ad3ceb54ab3e34bf518ae6b SHA1 7184b70423bc5b7db82bc20fc6ea4a1ba5e7198e SHA256 ba09b4cf79529d70102332b3d3aa61ded7d2507acdf5117dab92eb2e20dc80ef -MISC ChangeLog 800 RMD160 ddf17e0c01be66a9826737144bd14ed3f0745d2d SHA1 a6d4d11451fba5572c664136a18436996bd4dd86 SHA256 cd978bddff4ba5d53c35130535366ebba3472b8dddc19ee862065ce7f3620bc2 +EBUILD tgi-tools-0.1.ebuild 1550 RMD160 bf941c3a6e5fdc47d7e5b87cded61958ebc60dbb SHA1 aee075425159ea620d716ffbcccc0c7184b60f60 SHA256 88cb402fc575982c1a6761983fc8141c500af5f5e34f80435a63fbfc8ce21ae9 +MISC ChangeLog 953 RMD160 57337b4e90b4985741dcf570f3153fa6cfdeb869 SHA1 b79b69d12f0975329a1ad74c4ab4336bdc880925 SHA256 3ee0d9df2ab7c714a232e1c4b51ac0a38b3c6494ed4c27126a63194b98232b73 MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 diff --git a/sci-biology/tgi-tools/tgi-tools-0.1.ebuild b/sci-biology/tgi-tools/tgi-tools-0.1.ebuild index 3d1ada15b..b21b39c13 100644 --- a/sci-biology/tgi-tools/tgi-tools-0.1.ebuild +++ b/sci-biology/tgi-tools/tgi-tools-0.1.ebuild @@ -29,11 +29,12 @@ src_unpack() { } src_compile() { - sed -i 's/use Mailer;/#use Mailer;/' ${S}/seqclean/seqclean - sed -i 's/-V\t\tverbose/-V\t\tverbose\\/' ${S}/zmsort/zmsort.cpp + sed -i 's/use Mailer;/#use Mailer;/' seqclean/seqclean + sed -i 's/-V\t\tverbose/-V\t\tverbose\\/' zmsort/zmsort.cpp # TODO: fix error in nrcl for i in cdbfasta mdust psx sclust tclust trimpoly zmsort $(use pvm && echo pvmsx); do - sed -i 's/CFLAGS[ ]*=/CFLAGS :=/; s/-D_REENTRANT/-D_REENTRANT \${CFLAGS}/; s/CFLAGS[ ]*:=[ ]*-O2$//' ${S}/${i}/Makefile + sed -i 's/CFLAGS[ ]*=/CFLAGS :=/; s/-D_REENTRANT/-D_REENTRANT \${CFLAGS}/; s/CFLAGS[ ]*:=[ ]*-O2$//' \ + ${i}/Makefile cd "${S}/${i}" || die "cd ${i} failed" emake || die "emake failed in ${i}" done |