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authorRobin H. Johnson <robbat2@gentoo.org>2015-08-08 13:49:04 -0700
committerRobin H. Johnson <robbat2@gentoo.org>2015-08-08 17:38:18 -0700
commit56bd759df1d0c750a065b8c845e93d5dfa6b549d (patch)
tree3f91093cdb475e565ae857f1c5a7fd339e2d781e /sci-biology/iqpnni
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proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed
Diffstat (limited to 'sci-biology/iqpnni')
-rw-r--r--sci-biology/iqpnni/Manifest3
-rw-r--r--sci-biology/iqpnni/files/iqpnni-3.3.1-gcc4.3.patch13
-rw-r--r--sci-biology/iqpnni/iqpnni-3.2.ebuild26
-rw-r--r--sci-biology/iqpnni/iqpnni-3.3.1.ebuild34
-rw-r--r--sci-biology/iqpnni/iqpnni-3.3.2.ebuild28
-rw-r--r--sci-biology/iqpnni/metadata.xml5
6 files changed, 109 insertions, 0 deletions
diff --git a/sci-biology/iqpnni/Manifest b/sci-biology/iqpnni/Manifest
new file mode 100644
index 00000000000..ec521a7104b
--- /dev/null
+++ b/sci-biology/iqpnni/Manifest
@@ -0,0 +1,3 @@
+DIST iqpnni-3.2.tar.gz 638743 SHA256 0e97a03841e3460b9e0ddadbfa27393bf370ff82725a620c8d46a1ce85e4a20f
+DIST iqpnni-3.3.1.tar.gz 650395 SHA256 bdc5873c5dd59b07b8f8c9547e86120b53fa3cd802ec7acdad61bacc4c3ac7d9
+DIST iqpnni-3.3.2.tar.gz 646603 SHA256 e4ffc783c7444bfadd40c9d55e9fb0275fcf7dca80aa3217768c9bf63c28567f
diff --git a/sci-biology/iqpnni/files/iqpnni-3.3.1-gcc4.3.patch b/sci-biology/iqpnni/files/iqpnni-3.3.1-gcc4.3.patch
new file mode 100644
index 00000000000..c4f49284abc
--- /dev/null
+++ b/sci-biology/iqpnni/files/iqpnni-3.3.1-gcc4.3.patch
@@ -0,0 +1,13 @@
+diff -rc iqpnni-3.3.1-orig/src/constant.h iqpnni-3.3.1/src/constant.h
+*** iqpnni-3.3.1-orig/src/constant.h 2009-01-04 19:33:35.000000000 -0500
+--- iqpnni-3.3.1/src/constant.h 2009-01-04 19:40:21.000000000 -0500
+***************
+*** 36,41 ****
+--- 36,42 ----
+ #include <stdio.h>
+ #include <math.h>
+ #include <string>
++ #include <string.h>
+
+ using namespace std;
+
diff --git a/sci-biology/iqpnni/iqpnni-3.2.ebuild b/sci-biology/iqpnni/iqpnni-3.2.ebuild
new file mode 100644
index 00000000000..070e962fb31
--- /dev/null
+++ b/sci-biology/iqpnni/iqpnni-3.2.ebuild
@@ -0,0 +1,26 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+DESCRIPTION="Important Quartet Puzzling and NNI Operation"
+HOMEPAGE="http://www.cibiv.at/software/iqpnni/"
+SRC_URI="http://www.cibiv.at/software/iqpnni/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="doc"
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+src_install() {
+ dobin src/iqpnni
+
+ dodoc ChangeLog AUTHORS README NEWS TODO
+ if use doc ; then
+ dohtml manual/iqpnni-manual.html
+ insinto /usr/share/doc/${P}
+ doins manual/iqpnni-manual.pdf
+ fi
+}
diff --git a/sci-biology/iqpnni/iqpnni-3.3.1.ebuild b/sci-biology/iqpnni/iqpnni-3.3.1.ebuild
new file mode 100644
index 00000000000..8916e7e5160
--- /dev/null
+++ b/sci-biology/iqpnni/iqpnni-3.3.1.ebuild
@@ -0,0 +1,34 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+inherit eutils
+
+DESCRIPTION="Important Quartet Puzzling and NNI Operation"
+HOMEPAGE="http://www.cibiv.at/software/iqpnni/"
+SRC_URI="http://www.cibiv.at/software/iqpnni/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="amd64 x86"
+IUSE="doc"
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+src_unpack() {
+ unpack ${A}
+ cd "${S}"
+ epatch "${FILESDIR}"/${P}-*.patch
+}
+
+src_install() {
+ dobin src/iqpnni
+
+ dodoc ChangeLog AUTHORS README NEWS TODO
+ if use doc ; then
+ dohtml manual/iqpnni-manual.html
+ insinto /usr/share/doc/${P}
+ doins manual/iqpnni-manual.pdf
+ fi
+}
diff --git a/sci-biology/iqpnni/iqpnni-3.3.2.ebuild b/sci-biology/iqpnni/iqpnni-3.3.2.ebuild
new file mode 100644
index 00000000000..e9939ef0f50
--- /dev/null
+++ b/sci-biology/iqpnni/iqpnni-3.3.2.ebuild
@@ -0,0 +1,28 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=4
+
+DESCRIPTION="Important Quartet Puzzling and NNI Operation"
+HOMEPAGE="http://www.cibiv.at/software/iqpnni/"
+SRC_URI="http://www.cibiv.at/software/iqpnni/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="doc"
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+src_install() {
+ dobin src/iqpnni
+
+ dodoc ChangeLog AUTHORS README NEWS TODO
+ if use doc ; then
+ dohtml manual/iqpnni-manual.html
+ insinto /usr/share/doc/${P}
+ doins manual/iqpnni-manual.pdf
+ fi
+}
diff --git a/sci-biology/iqpnni/metadata.xml b/sci-biology/iqpnni/metadata.xml
new file mode 100644
index 00000000000..f17a827e310
--- /dev/null
+++ b/sci-biology/iqpnni/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+</pkgmetadata>