summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorDavid Seifert <soap@gentoo.org>2017-11-25 17:47:47 +0100
committerDavid Seifert <soap@gentoo.org>2017-11-25 18:33:09 +0100
commit76c1f93b658b64b71f6462fbb214c6664162252d (patch)
treeeb3cec4614fef671b31ec34c3d36db5ce6cbbaa3 /sci-biology
parentsci-biology/trnascan-se: [QA] Consistent whitespace in metadata.xml (diff)
downloadgentoo-76c1f93b658b64b71f6462fbb214c6664162252d.tar.gz
gentoo-76c1f93b658b64b71f6462fbb214c6664162252d.tar.bz2
gentoo-76c1f93b658b64b71f6462fbb214c6664162252d.zip
sci-biology/vienna-rna: [QA] Consistent whitespace in metadata.xml
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/vienna-rna/metadata.xml42
1 files changed, 21 insertions, 21 deletions
diff --git a/sci-biology/vienna-rna/metadata.xml b/sci-biology/vienna-rna/metadata.xml
index 861e9e38c31..bbc3d41fb4a 100644
--- a/sci-biology/vienna-rna/metadata.xml
+++ b/sci-biology/vienna-rna/metadata.xml
@@ -1,25 +1,25 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <longdescription>
- The Vienna RNA Package consists of a C code library and several
- stand-alone programs for the prediction and comparison of RNA secondary
- structures. RNA secondary structure prediction through energy
- minimization is the most used function in the package. We provide three
- kinds of dynamic programming algorithms for structure prediction: the
- minimum free energy algorithm of (Zuker and Stiegler 1981) which yields a
- single optimal structure, the partition function algorithm of
- (McCaskill 1990) which calculates base pair probabilities in the
- thermodynamic ensemble, and the suboptimal folding algorithm of
- (Wuchty et.al 1999) which generates all suboptimal structures within a
- given energy range of the optimal energy. For secondary structure
- comparison, the package contains several measures of distance
- (dissimilarities) using either string alignment or tree-editing
- (Shapiro and Zhang 1990). Finally, we provide an algorithm to design
- sequences with a predefined structure (inverse folding).
-</longdescription>
+ <maintainer type="project">
+ <email>sci-biology@gentoo.org</email>
+ <name>Gentoo Biology Project</name>
+ </maintainer>
+ <longdescription>
+ The Vienna RNA Package consists of a C code library and several
+ stand-alone programs for the prediction and comparison of RNA secondary
+ structures. RNA secondary structure prediction through energy
+ minimization is the most used function in the package. We provide three
+ kinds of dynamic programming algorithms for structure prediction: the
+ minimum free energy algorithm of (Zuker and Stiegler 1981) which yields a
+ single optimal structure, the partition function algorithm of
+ (McCaskill 1990) which calculates base pair probabilities in the
+ thermodynamic ensemble, and the suboptimal folding algorithm of
+ (Wuchty et.al 1999) which generates all suboptimal structures within a
+ given energy range of the optimal energy. For secondary structure
+ comparison, the package contains several measures of distance
+ (dissimilarities) using either string alignment or tree-editing
+ (Shapiro and Zhang 1990). Finally, we provide an algorithm to design
+ sequences with a predefined structure (inverse folding).
+ </longdescription>
</pkgmetadata>