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| author |   David Seifert <soap@gentoo.org> | 2016-08-13 12:33:50 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2016-08-13 12:34:09 +0200 |
| commit | aee8fa1dbbe56f8f592e3d4dfc4bc6832126a45a (patch) | |
| tree | dde6292b76bd11ee0fdfd962a3a0f0bc1ad5c83a /sci-biology | |
| parent | dev-python/rarfile: add python:3.5 support #590352 (diff) | |
| download | gentoo-aee8fa1dbbe56f8f592e3d4dfc4bc6832126a45a.tar.gz gentoo-aee8fa1dbbe56f8f592e3d4dfc4bc6832126a45a.tar.bz2 gentoo-aee8fa1dbbe56f8f592e3d4dfc4bc6832126a45a.zip | |
sci-biology/allpathslg: Unconditionally require OpenMP support
Gentoo-bug: 591166
* The configure script of sci-biology/allpathslg allows for
specifying --enable/--disable-openmp, without it actually
being optional.
Package-Manager: portage-2.3.0
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/allpathslg/allpathslg-52488-r2.ebuild (renamed from sci-biology/allpathslg/allpathslg-52488-r1.ebuild) | 27 |
1 files changed, 17 insertions, 10 deletions
diff --git a/sci-biology/allpathslg/allpathslg-52488-r1.ebuild b/sci-biology/allpathslg/allpathslg-52488-r2.ebuild index 268d7594f9cc..4164bce9d896 100644 --- a/sci-biology/allpathslg/allpathslg-52488-r1.ebuild +++ b/sci-biology/allpathslg/allpathslg-52488-r2.ebuild @@ -4,7 +4,7 @@ EAPI=6 -inherit autotools flag-o-matic +inherit autotools flag-o-matic toolchain-funcs DESCRIPTION="De novo assembly of whole-genome shotgun microreads" # see also http://www.broadinstitute.org/software/allpaths-lg/blog/?page_id=12 @@ -14,14 +14,13 @@ SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_ LICENSE="MIT" SLOT="0" KEYWORDS="~amd64" -IUSE="openmp" RDEPEND=" !sci-biology/allpaths !sci-biology/vaal" DEPEND=" ${RDEPEND} - dev-libs/boost" + dev-libs/boost:=" PATCHES=( "${FILESDIR}/${P}_fix-buildsystem.patch" @@ -33,8 +32,21 @@ pkg_pretend() { # seems pre gcc-4.7 users must stay with: # ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/2013/2013-01/allpathslg-44837.tar.gz if [[ ${MERGE_TYPE} != binary ]]; then - [[ $(tc-getCC) == *gcc* ]] && [[ $(gcc-version) < 4.7 ]] && \ - die "You need to use gcc >4.7" + tc-is-gcc && [[ $(gcc-version) < 4.7 ]] && \ + die "You need to use gcc >4.7" + fi +} + +pkg_setup() { + if ! tc-has-openmp; then + ewarn "OpenMP is not available in your current selected compiler" + + if tc-is-clang; then + ewarn "OpenMP support in sys-devel/clang is provided by sys-libs/libomp," + ewarn "which you will need to build ${CATEGORY}/${PN} with USE=\"openmp\"" + fi + + die "need openmp capable compiler" fi } @@ -43,8 +55,3 @@ src_prepare() { eautoreconf } - -src_configure() { - econf \ - $(use_enable openmp) -} |