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authorMichał Górny <mgorny@gentoo.org>2020-07-24 14:29:19 +0200
committerMichał Górny <mgorny@gentoo.org>2020-07-24 16:31:32 +0200
commit511cd9618f77457ce2ced159fe8eb4fd927e22ca (patch)
tree8de323c3cc9ce80ebe0c0fae8540da75f65ac70e /sci-libs
parentdev-python/sphinx_rtd_theme: Port to py3.9 (diff)
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sci-libs/scipy: Bump to 1.5.2
Signed-off-by: Michał Górny <mgorny@gentoo.org>
Diffstat (limited to 'sci-libs')
-rw-r--r--sci-libs/scipy/Manifest3
-rw-r--r--sci-libs/scipy/scipy-1.5.2.ebuild160
2 files changed, 163 insertions, 0 deletions
diff --git a/sci-libs/scipy/Manifest b/sci-libs/scipy/Manifest
index 44754c74cdb..9ed4593e3fc 100644
--- a/sci-libs/scipy/Manifest
+++ b/sci-libs/scipy/Manifest
@@ -10,3 +10,6 @@ DIST scipy-1.5.0.tar.gz 25573194 BLAKE2B f505e5f0627687aeefe0af0886b03eead9f6426
DIST scipy-1.5.1-html.zip 23582280 BLAKE2B 97b256bc7367836f35ce7e0ac47436dd72c1afe249dea1a2f437ea883e74ecb8f5bbe22e20bb804aac66b86fb35e8b4f0e329c44d9d601318ef1accc82e8e850 SHA512 eb0c7736d2bdc9f45926d19f4a22e1168d0f06e21b338cd7e7884af79c7634885350c510251d4cd1629b2a294003e93f8e71bafd8ec64c1aea4d4174c3946597
DIST scipy-1.5.1-ref.pdf 33698325 BLAKE2B 6ff0d13474acf2960352580765c86ef54faa9bb616b4b8097665fa3b8a3a6033acb524d5bb76757b23d0ea9550b556293509a91e5cbeb7b0a388ea75d1bec29b SHA512 c0fbebb5dec19aebe7783507ccebf28134227096caad915e1f28f963386a07b1246fa624e4680691809c5ba31a09d3dd6e4f27f9e86f5985f8a7eecb1eea82d3
DIST scipy-1.5.1.tar.gz 25575560 BLAKE2B e431a54f1810590b75d0f115bdbcd3c561d0d918664d91654fa4f2583d4d2807deae36b3293be0a5add650fb5d99f744e1d893d369f6053741d863e2826dcc3c SHA512 d46abaaa52e5521d8f3f6d79f58c8473a8649faa01e93d250d2ee19d5778e31c13aaa855bd8f059ddc1424ae13001f15a41f240fa6b0acf3ffd911ea30da1040
+DIST scipy-1.5.2-html.zip 23166876 BLAKE2B a90d6a2eb25c56147c0c1cccb58cddd230c20cd70dcc5c39b7307acaeac5320ff1c6ed46e3027ec40f604db503a90620cf87212e45f3158c667ec20d95bac649 SHA512 35c675821675844b163eacdaf448173edb78adb5e9f3e438a70809b8b59425a987fd3ed7d6f7863612111ece4a6a36504279ef4492166f5e24a9b2c7ea9d21e7
+DIST scipy-1.5.2-ref.pdf 33462200 BLAKE2B 5784612eb41221a02520778d72341702a7dd4ee8c0147592e170054107219b03af4ccebe1f5e2a57f90f3b892455f95ec45d8eac8e4a7155e21e9ae0526b302f SHA512 15961b7280eb903d2db7a05915b94b3c298cabf68a6694da217680e23fe621885dd169dc88a033ee001a89bc6e6b13ef787ec61009f6ffe38aeaa2dfb84f8a47
+DIST scipy-1.5.2.tar.gz 25423944 BLAKE2B 0a4987da0cde4f33bbb0e2be571b59e9064b1c6554c61c1655100abdecfde54d64845cd30c5b3fcac3ae7426572757aa9a66065dd3b48e6e4cdd4d0ea847868e SHA512 45463df30a0f6270d9f4cf52235f31607904a6ae1375e12600e7f1ab2d27b1dc25a6211b49dceb71506be22c756890adaf9f81d9e6be7455def86c9caf0dc923
diff --git a/sci-libs/scipy/scipy-1.5.2.ebuild b/sci-libs/scipy/scipy-1.5.2.ebuild
new file mode 100644
index 00000000000..a3d305b0846
--- /dev/null
+++ b/sci-libs/scipy/scipy-1.5.2.ebuild
@@ -0,0 +1,160 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python3_{6..9} )
+PYTHON_REQ_USE="threads(+)"
+
+DOC_PV=${PV}
+
+inherit fortran-2 distutils-r1 flag-o-matic multiprocessing toolchain-funcs
+
+DESCRIPTION="Scientific algorithms library for Python"
+HOMEPAGE="https://www.scipy.org/"
+SRC_URI="
+ mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz
+ doc? (
+ https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${PV}.zip -> ${PN}-${DOC_PV}-html.zip
+ https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-ref-${PV}.pdf -> ${PN}-${DOC_PV}-ref.pdf
+ )"
+
+LICENSE="BSD LGPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~arm ~arm64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos"
+IUSE="doc sparse test"
+RESTRICT="!test? ( test )"
+
+CDEPEND="
+ >=dev-python/numpy-1.10[lapack,${PYTHON_USEDEP}]
+ sci-libs/arpack:0=
+ virtual/cblas
+ virtual/lapack
+ sparse? ( sci-libs/umfpack:0= )"
+DEPEND="${CDEPEND}
+ dev-lang/swig
+ >=dev-python/cython-0.29.13[${PYTHON_USEDEP}]
+ >=dev-python/setuptools-36[${PYTHON_USEDEP}]
+ dev-python/pybind11[${PYTHON_USEDEP}]
+ virtual/pkgconfig
+ doc? ( app-arch/unzip )
+ test? (
+ dev-python/nose[${PYTHON_USEDEP}]
+ dev-python/pytest[${PYTHON_USEDEP}]
+ )"
+RDEPEND="${CDEPEND}
+ dev-python/pillow[${PYTHON_USEDEP}]"
+
+DOCS=( HACKING.rst.txt THANKS.txt )
+
+DISTUTILS_IN_SOURCE_BUILD=1
+
+src_unpack() {
+ default
+ if use doc; then
+ unzip -qo "${DISTDIR}"/${PN}-${DOC_PV}-html.zip -d html || die
+ fi
+}
+
+pc_incdir() {
+ $(tc-getPKG_CONFIG) --cflags-only-I $@ | \
+ sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||'
+}
+
+pc_libdir() {
+ $(tc-getPKG_CONFIG) --libs-only-L $@ | \
+ sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||'
+}
+
+pc_libs() {
+ $(tc-getPKG_CONFIG) --libs-only-l $@ | \
+ sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \
+ -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \
+ | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||'
+}
+
+python_prepare_all() {
+ # scipy automatically detects libraries by default
+ export {FFTW,FFTW3,UMFPACK}=None
+ use sparse && unset UMFPACK
+ # the missing symbols are in -lpythonX.Y, but since the version can
+ # differ, we just introduce the same scaryness as on Linux/ELF
+ [[ ${CHOST} == *-darwin* ]] \
+ && append-ldflags -bundle "-undefined dynamic_lookup" \
+ || append-ldflags -shared
+ [[ -z ${FC} ]] && export FC="$(tc-getFC)"
+ # hack to force F77 to be FC until bug #278772 is fixed
+ [[ -z ${F77} ]] && export F77="$(tc-getFC)"
+ export F90="${FC}"
+ export SCIPY_FCONFIG="config_fc --noopt --noarch"
+ append-fflags -fPIC
+
+ local libdir="${EPREFIX}"/usr/$(get_libdir)
+ cat >> site.cfg <<-EOF || die
+ [blas]
+ include_dirs = $(pc_incdir cblas)
+ library_dirs = $(pc_libdir cblas blas):${libdir}
+ blas_libs = $(pc_libs cblas blas)
+ [lapack]
+ library_dirs = $(pc_libdir lapack):${libdir}
+ lapack_libs = $(pc_libs lapack)
+ EOF
+ cat >> setup.cfg <<-EOF || die
+ [options]
+ zip_safe = False
+ EOF
+
+ # Drop hashes to force rebuild of cython based .c code
+ rm cythonize.dat || die
+
+ # TODO
+ sed -e 's:test_magic_square_sparse_no_presolve:_&:' \
+ -i scipy/optimize/tests/test_linprog.py || die
+ sed -e "s:== 'levy_stable':in ('levy_stable', 'crystalball', 'ncf'):" \
+ -i scipy/stats/tests/test_continuous_basic.py || die
+
+ distutils-r1_python_prepare_all
+}
+
+python_configure_all() {
+ # bug 721860
+ test-flag-FC -fallow-argument-mismatch &&
+ append-fflags -fallow-argument-mismatch
+}
+
+python_compile() {
+ # FIXME: parallel python building fails, bug #614464
+ export MAKEOPTS=-j1
+
+ ${EPYTHON} tools/cythonize.py || die
+ distutils-r1_python_compile \
+ ${SCIPY_FCONFIG}
+}
+
+python_test() {
+ # fails with bdist_egg. should it be fixed in distutils-r1 eclass?
+ distutils_install_for_testing ${SCIPY_FCONFIG}
+ cd "${TEST_DIR}/lib" || die "no ${TEST_DIR} available"
+ PYTHONPATH=. "${EPYTHON}" -c "
+import scipy, sys
+r = scipy.test('fast', verbose=2)
+sys.exit(0 if r else 1)" || die "Tests fail with ${EPYTHON}"
+}
+
+python_install_all() {
+ use doc && \
+ local DOCS=( "${DISTDIR}"/${PN}-${DOC_PV}-ref.pdf ) \
+ local HTML_DOCS=( "${WORKDIR}"/html/. )
+ distutils-r1_python_install_all
+}
+
+python_install() {
+ distutils-r1_python_install ${SCIPY_FCONFIG}
+ python_optimize
+}
+
+pkg_postinst() {
+ elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER"
+ elog "to your prefered image viewer. Example:"
+ elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc"
+}