proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

11 files changed, 347 insertions, 0 deletions

diff --git a/sci-visualization/ggobi/Manifest b/sci-visualization/ggobi/Manifest
new file mode 100644
index 000000000000..ffad2e2e162b
--- /dev/null
+++ b/sci-visualization/ggobi/Manifest
@@ -0,0 +1,3 @@
+DIST ggobi-2.1.8.tar.bz2 2531628 SHA256 2f814376d08a783628d2150d64cddda2e86b71f12847f1d51ba977197102fa8f
+DIST ggobi-2.1.9.tar.bz2 2778042 SHA256 9f47ccfdbae7ae22c0096e9a171a523505e031f68dfaf705799cb87d42d73dcc SHA512 cb19a74cea71a3c647b51d5f480c11f99fb1f13d7d5393d5bfa8ac2226cbdff4a133cc304936e50214533802108a876562e3fdd4bb1ced56ffad015d56907f08 WHIRLPOOL 4879f5549c5a70ba9b30866cf86bb3835f7834387ef2915c3ef750e03d6f1e62ef133f5fdba9dfc202c066a1152a4f3104485e40fa784949406cd043c03b2e2c
+DIST ggobi_2.1.10.orig.tar.bz2 2776784 SHA256 08881aacb70a7a80e3778197bb4c673e634aea403fb7f9e282df189764b96aa3 SHA512 40bc4a7fae992bf327d6b36c5aea7802279a3b6229242f31386e771636b4561260914a7fefb6a6337c1e1ab5a0682fbdd626389b83d9b57d0c2d050fac3723e5 WHIRLPOOL ee751f5278937433db76b8c43d032e1dd7d78541848ab7da412a2da2bebb9300bb4689578b1809328368024f5691b3371b579c882ea01f4ee37ae521cb23e76f
diff --git a/sci-visualization/ggobi/files/ggobi-2.1.10-desktop.patch b/sci-visualization/ggobi/files/ggobi-2.1.10-desktop.patch
new file mode 100644
index 000000000000..388cb85c975c
--- /dev/null
+++ b/sci-visualization/ggobi/files/ggobi-2.1.10-desktop.patch
@@ -0,0 +1,11 @@
+--- xdg/ggobi.desktop.orig	2013-02-24 22:20:02.616872402 -0800
++++ xdg/ggobi.desktop	2013-02-24 22:20:13.293924862 -0800
+@@ -6,6 +6,6 @@
+ Comment=Multivariate interactive graphics for exploratory data analysis
+ TryExec=ggobi
+ Exec=ggobi
+-Icon=ggobi.png
+-Categories=Graphics;2DGraphics
++Icon=ggobi
++Categories=Graphics;2DGraphics;
+ MimeType=text/comma-separated-values;text/csv;application/csv;
diff --git a/sci-visualization/ggobi/files/ggobi-2.1.10-hardened.patch b/sci-visualization/ggobi/files/ggobi-2.1.10-hardened.patch
new file mode 100644
index 000000000000..63681a0a03ea
--- /dev/null
+++ b/sci-visualization/ggobi/files/ggobi-2.1.10-hardened.patch
@@ -0,0 +1,66 @@
+Description: Upstream changes introduced in version 2.1.10-4
+ This patch has been created by dpkg-source during the package build.
+ Here's the last changelog entry, hopefully it gives details on why
+ those changes were made:
+ .
+ ggobi (2.1.10-4) unstable; urgency=low
+ .
+   * src/ggobi.c: Applied patch kindly supplied by Michael Lawrence to
+     address issues found under hardened compiler flags (Closes: #646260)
+ .
+ The person named in the Author field signed this changelog entry.
+Author: Dirk Eddelbuettel <edd@debian.org>
+Bug-Debian: http://bugs.debian.org/646260
+
+---
+The information above should follow the Patch Tagging Guidelines, please
+checkout http://dep.debian.net/deps/dep3/ to learn about the format. Here
+are templates for supplementary fields that you might want to add:
+
+Origin: <vendor|upstream|other>, <url of original patch>
+Bug: <url in upstream bugtracker>
+Bug-Debian: http://bugs.debian.org/<bugnumber>
+Bug-Ubuntu: https://launchpad.net/bugs/<bugnumber>
+Forwarded: <no|not-needed|url proving that it has been forwarded>
+Reviewed-By: <name and email of someone who approved the patch>
+Last-Update: <YYYY-MM-DD>
+
+--- ggobi-2.1.10.orig/src/ggobi.c
++++ ggobi-2.1.10/src/ggobi.c
+@@ -698,10 +698,10 @@ ValidateGGobiRef (ggobid * gg, gboolean
+   }
+ 
+   if (fatal) {
+-    g_error (error_msg);
++    g_error ("%s", error_msg);
+   }
+   else
+-    g_critical (error_msg);
++    g_critical ("%s", error_msg);
+ 
+   return (NULL);
+ }
+@@ -718,9 +718,9 @@ ValidateDatadRef (GGobiData * d, ggobid
+   }
+ 
+   if (fatal)
+-    g_error (error_msg);
++    g_error ("%s", error_msg);
+   else
+-    g_critical (error_msg);
++    g_critical ("%s", error_msg);
+ 
+   return (NULL);
+ }
+@@ -739,9 +739,9 @@ ValidateDisplayRef (displayd * d, ggobid
+   }
+ 
+   if (fatal)
+-    g_error (error_msg);
++    g_error ("%s", error_msg);
+   else
+-    g_critical (error_msg);
++    g_critical ("%s", error_msg);
+ 
+   return (NULL);
+ }
diff --git a/sci-visualization/ggobi/files/ggobi-2.1.8-graphviz.patch b/sci-visualization/ggobi/files/ggobi-2.1.8-graphviz.patch
new file mode 100644
index 000000000000..402551b7e523
--- /dev/null
+++ b/sci-visualization/ggobi/files/ggobi-2.1.8-graphviz.patch
@@ -0,0 +1,13 @@
+--- plugins/GraphLayout/graphviz.c	2009-03-15 15:03:18.000000000 -0400
++++ plugins/GraphLayout/graphviz.c	2009-03-15 15:04:30.000000000 -0400
+@@ -267,8 +267,8 @@
+       m = visible[i];
+       name = (gchar *) g_array_index (d->rowlab, gchar *, m);
+       node = agfindnode (graph, name);
+-      pos[i][0] = (gdouble) ND_coord_i(node).x;
+-      pos[i][1] = (gdouble) ND_coord_i(node).y;
++      pos[i][0] = (gdouble) ND_coord(node).x;
++      pos[i][1] = (gdouble) ND_coord(node).y;
+     }
+ 
+   } else if (layout_type == TWOPI_LAYOUT) {
diff --git a/sci-visualization/ggobi/files/ggobi-2.1.8-plugindir.patch b/sci-visualization/ggobi/files/ggobi-2.1.8-plugindir.patch
new file mode 100644
index 000000000000..0476f47a816d
--- /dev/null
+++ b/sci-visualization/ggobi/files/ggobi-2.1.8-plugindir.patch
@@ -0,0 +1,11 @@
+--- plugins/Makefile.plugin.orig	2009-12-14 22:15:01.000000000 +0000
++++ plugins/Makefile.plugin	2009-12-14 22:15:16.000000000 +0000
+@@ -2,7 +2,7 @@
+ 
+ # Every plugin provides a single library to GGobi, define it here.
+ # Its name should start with 'lib' and end with '.la'.
+-plugindir = $(datadir)/ggobi/plugins/$(PACKAGE_NAME)
++plugindir = $(libdir)/ggobi/plugins/$(PACKAGE_NAME)
+ plugin_LTLIBRARIES        = plugin.la
+ 
+ # Most plugins will only require GGobi and its dependencies (gtk, libxml2)
diff --git a/sci-visualization/ggobi/files/ggobi-2.1.8-syslibltdl.patch b/sci-visualization/ggobi/files/ggobi-2.1.8-syslibltdl.patch
new file mode 100644
index 000000000000..c381a98445ce
--- /dev/null
+++ b/sci-visualization/ggobi/files/ggobi-2.1.8-syslibltdl.patch
@@ -0,0 +1,26 @@
+--- ./Makefile.am.orig	2009-12-14 20:56:57.000000000 +0000
++++ ./Makefile.am	2009-12-14 20:57:24.000000000 +0000
+@@ -1,4 +1,4 @@
+-SUBDIRS = libltdl src plugins po
++SUBDIRS = src plugins po
+ 
+ EXTRA_DIST = bootstrap CPLicense.txt
+ 
+--- ./configure.ac.orig	2009-12-14 20:56:49.000000000 +0000
++++ ./configure.ac	2009-12-14 21:00:11.000000000 +0000
+@@ -144,14 +144,12 @@
+ # and to support DLLs on Windows. Also build libltdl for loading plugins.
+ AC_DISABLE_STATIC
+ AC_LIBTOOL_WIN32_DLL
+-AC_LIBLTDL_CONVENIENCE
+-AC_LIBTOOL_DLOPEN
+ AC_PROG_LIBTOOL
+ 
+ # Configure libltdl build
++AC_WITH_LTDL
+ AC_SUBST(INCLTDL)
+ AC_SUBST(LIBLTDL)
+-AC_CONFIG_SUBDIRS(libltdl)
+ 
+ # Configure for building against local libintl
+ AC_SUBST(INCINTL)
diff --git a/sci-visualization/ggobi/files/ggobi-2.1.9-as-needed.patch b/sci-visualization/ggobi/files/ggobi-2.1.9-as-needed.patch
new file mode 100644
index 000000000000..3bec9b55c21d
--- /dev/null
+++ b/sci-visualization/ggobi/files/ggobi-2.1.9-as-needed.patch
@@ -0,0 +1,40 @@
+--- configure.ac.orig	2012-06-26 05:46:07.000000000 +0100
++++ configure.ac	2012-06-26 05:46:44.000000000 +0100
+@@ -178,6 +178,8 @@
+  echo "Looking for gtk2"
+ 
+ PKG_CHECK_MODULES(GTK, [gtk+-2.0 >= 2.6.0])
++AC_CHECK_LIB(m,sqrt)
++PKG_CHECK_MODULES(GMODULE, [gmodule-2.0 >= 2.0])
+ 
+ AC_SUBST(GTK_CFLAGS)
+ AC_SUBST(GTK_LIBS)
+
+--- src/Makefile.am.orig	2012-06-26 04:53:20.000000000 +0100
++++ src/Makefile.am	2012-06-26 04:54:04.000000000 +0100
+@@ -4,7 +4,6 @@
+ libggobi_la_GOBHEADERS = $(libggobi_la_GOBS:%.gob=ggobi-%.h)
+ libggobi_la_GOBOBJECTS = $(libggobi_la_GOBS:%.gob=ggobi-%.lo)
+ libggobi_la_GOBSTAMPS = $(libggobi_la_GOBS:%.gob=.%.gob.stamp)
+-libggobi_la_LDFLAGS  = @GTK_LIBS@ @LIBXML_LIBS@
+ libggobi_la_BUILT = array.c ash1d.c barchart.c barchartClass.c \
+   barchart_ui.c brush.c brush_api.c brush_bins.c brush_init.c brush_link.c \
+   brush_ui.c color.c color_ui.c cpanel.c display.c display_tree.c display_ui.c \
+@@ -27,7 +26,7 @@
+   write_csv.c write_xml.c wvis.c wvis_ui.c xlines.c xyplot.c \
+   xyplot_ui.c $(libggobi_la_GOBSOURCES)
+ libggobi_la_SOURCES = $(libggobi_la_BUILT) $(libggobi_la_GOBSTAMPS)
+-libggobi_la_LIBADD = $(libggobi_la_GOBOBJECTS)
++libggobi_la_LIBADD = $(libggobi_la_GOBOBJECTS) @GTK_LIBS@ @LIBXML_LIBS@ @GMODULE_LIBS@
+ libggobi_la_DEPENDENCIES = $(libggobi_la_GOBOBJECTS)
+ pkginclude_HEADERS = GGobiAPI.h ggobiClass.h tour1d_pp.h GGobiApp.h \
+   noop-toggle.h tour2d_pp.h GGobiEvents.h parcoordsClass.h tour_pp.h \
+@@ -59,7 +58,7 @@
+ # Windows specific
+ if OS_WIN32
+ libggobi_la_DEPENDENCIES+=libggobi.def
+-libggobi_la_LDFLAGS+=-Wc,-s -no-undefined -export-symbols libggobi.def
++libggobi_la_LDFLAGS=-Wc,-s -no-undefined -export-symbols libggobi.def
+ ggobi_LDFLAGS = -mwindows -s
+ endif
+ 
diff --git a/sci-visualization/ggobi/ggobi-2.1.10.ebuild b/sci-visualization/ggobi/ggobi-2.1.10.ebuild
new file mode 100644
index 000000000000..51c1a52bb7fd
--- /dev/null
+++ b/sci-visualization/ggobi/ggobi-2.1.10.ebuild
@@ -0,0 +1,57 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+inherit eutils autotools
+
+DESCRIPTION="Visualization program for exploring high-dimensional data"
+HOMEPAGE="http://www.ggobi.org/"
+# source code release is not well published
+#SRC_URI="http://www.ggobi.org/downloads/${P}.tar.bz2"
+SRC_URI="mirror://debian/pool/main/g/${PN}/${PN}_${PV}.orig.tar.bz2"
+
+LICENSE="CPL-1.0"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc minimal nls"
+
+RDEPEND="
+	dev-libs/libxml2:2
+	media-gfx/graphviz
+	x11-libs/gtk+:2"
+DEPEND="${RDEPEND}
+	virtual/pkgconfig"
+
+src_prepare() {
+	sed -i \
+		-e 's|ND_coord_i|ND_coord|' \
+		plugins/GraphLayout/graphviz.c || die
+	rm m4/libtool.m4 m4/lt*m4 plugins/*/aclocal.m4 || die
+	epatch \
+		"${FILESDIR}"/${PN}-2.1.8-plugindir.patch \
+		"${FILESDIR}"/${PN}-2.1.9-as-needed.patch \
+		"${FILESDIR}"/${PN}-2.1.10-hardened.patch \
+		"${FILESDIR}"/${PN}-2.1.10-desktop.patch
+	# need the ${S} for recursivity lookup
+	AT_M4DIR="${S}"/m4 eautoreconf
+}
+
+src_configure() {
+	econf \
+		--docdir="${EPREFIX}/usr/share/doc/${PF}" \
+		--disable-rpath \
+		$(use_enable nls) \
+		$(use_with !minimal all-plugins)
+}
+
+src_compile() {
+	emake all ggobirc
+}
+
+src_install() {
+	default
+	insinto /etc/xdg/ggobi
+	doins ggobirc
+	use doc || rm "${ED}"/usr/share/doc/${PF}/*.pdf
+}
diff --git a/sci-visualization/ggobi/ggobi-2.1.8.ebuild b/sci-visualization/ggobi/ggobi-2.1.8.ebuild
new file mode 100644
index 000000000000..6ea20c2f9d4f
--- /dev/null
+++ b/sci-visualization/ggobi/ggobi-2.1.8.ebuild
@@ -0,0 +1,57 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=2
+inherit eutils autotools
+
+DESCRIPTION="Visualization program for exploring high-dimensional data"
+HOMEPAGE="http://www.ggobi.org"
+SRC_URI="http://www.ggobi.org/downloads/${P}.tar.bz2"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="amd64 x86"
+IUSE="minimal nls"
+
+RDEPEND="
+	>=media-gfx/graphviz-2.6
+	x11-libs/gtk+:2
+	dev-libs/libxml2:2"
+DEPEND="${RDEPEND}
+	virtual/pkgconfig"
+
+src_prepare() {
+	# build with external system libltdl
+	rm -rf libltdl
+
+	has_version ">=media-gfx/graphviz-2.22" && \
+		epatch "${FILESDIR}"/${P}-graphviz.patch
+	epatch "${FILESDIR}"/${P}-syslibltdl.patch
+	epatch "${FILESDIR}"/${P}-plugindir.patch
+	for f in $(find "${S}" -name "configure.ac"); do
+		sed -i -e '/AM_INIT/ a\AM_MAINTAINER_MODE' $f || die #342747
+	done
+	eautoreconf
+}
+
+src_configure() {
+	econf \
+		--disable-maintainer-mode \
+		--disable-rpath \
+		$(use_enable nls) \
+		$(use_with !minimal all-plugins)
+}
+
+src_compile() {
+	emake || die "emake failed"
+	# generate default configuration
+	emake ggobirc || die "ggobi configuration generation failed"
+}
+
+src_install() {
+	emake DESTDIR="${D}" install || die "emake install failed"
+	dodoc README AUTHORS NEWS ChangeLog
+	insinto /etc/xdg/ggobi
+	doins ggobirc || die
+}
diff --git a/sci-visualization/ggobi/ggobi-2.1.9-r1.ebuild b/sci-visualization/ggobi/ggobi-2.1.9-r1.ebuild
new file mode 100644
index 000000000000..7de4154b8358
--- /dev/null
+++ b/sci-visualization/ggobi/ggobi-2.1.9-r1.ebuild
@@ -0,0 +1,51 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=4
+inherit eutils autotools
+
+DESCRIPTION="Visualization program for exploring high-dimensional data"
+HOMEPAGE="http://www.ggobi.org/"
+SRC_URI="http://www.ggobi.org/downloads/${P}.tar.bz2"
+
+LICENSE="CPL-1.0"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc minimal nls"
+
+RDEPEND="media-gfx/graphviz
+	x11-libs/gtk+:2
+	dev-libs/libxml2:2"
+DEPEND="${RDEPEND}
+	virtual/pkgconfig"
+
+src_prepare() {
+	sed -i \
+		-e 's|ND_coord_i|ND_coord|' \
+		plugins/GraphLayout/graphviz.c || die
+	rm -f m4/libool.m4 m4/lt*m4
+	epatch \
+		"${FILESDIR}"/${PN}-2.1.8-plugindir.patch \
+		"${FILESDIR}"/${PN}-2.1.9-as-needed.patch
+	eautoreconf
+}
+
+src_configure() {
+	econf \
+		--docdir="${EPREFIX}/usr/share/doc/${PF}" \
+		--disable-rpath \
+		$(use_enable nls) \
+		$(use_with !minimal all-plugins)
+}
+
+src_compile() {
+	emake all ggobirc
+}
+
+src_install() {
+	default
+	insinto /etc/xdg/ggobi
+	doins ggobirc
+	use doc || rm "${ED}"/usr/share/doc/${PF}/*.pdf
+}
diff --git a/sci-visualization/ggobi/metadata.xml b/sci-visualization/ggobi/metadata.xml
new file mode 100644
index 000000000000..0c302c1e0140
--- /dev/null
+++ b/sci-visualization/ggobi/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<longdescription lang="en">
+  GGobi is an open source visualization program for exploring
+  high-dimensional data. It provides highly dynamic and interactive
+  graphics such as tours, as well as familiar graphics such as the
+  scatterplot, barchart and parallel coordinates plots. Plots are
+  interactive and linked with brushing and identification.    
+</longdescription>
+</pkgmetadata>