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-rw-r--r--sci-biology/trnascan-se/Manifest1
-rw-r--r--sci-biology/trnascan-se/trnascan-se-1.23-r2.ebuild44
2 files changed, 0 insertions, 45 deletions
diff --git a/sci-biology/trnascan-se/Manifest b/sci-biology/trnascan-se/Manifest
index b82cf548c77..56b13cc497e 100644
--- a/sci-biology/trnascan-se/Manifest
+++ b/sci-biology/trnascan-se/Manifest
@@ -1,2 +1 @@
-DIST trnascan-se-1.23.tar.bz2 482202 SHA256 a1d18a0b9decf4a93fa6cf02fb5867367729449fc8e47e3749c91678fc1f344a SHA512 4977febcecf8344fb77aad2eeb278637aebdb1d995fd26823e459b3767d4f40b20f57d343092cc2cb8024b0ccc385879f4b6406c69022f848aa1df0acf1a68d8 WHIRLPOOL 978328857eaef5666fcf38c22afabfb796984b5fa52a02a7167b653164ba0bc32fcb52d35159eef83732046245c598426739cd4ed63bf259ea85130dda17dd70
DIST trnascan-se-1.31.tar.gz 740960 SHA256 862924d869453d1c111ba02f47d4cd86c7d6896ff5ec9e975f1858682282f316 SHA512 ba55bc8dfa7e5aee9c9a86c135a55b767cda083b74668bd9af4aaaeb693f9c3a17dc8bade5793de12b775564f09fbb861b0ab4f25bf83ccb0954fecd01bb328d WHIRLPOOL aef8b9f8d44799bac134a36af45374cdaba4b30c041e71e3095252aa8272fe9bd0aa76091211ac270ad609f67f388d577a83ec2ed2433997963fd5708c5b6665
diff --git a/sci-biology/trnascan-se/trnascan-se-1.23-r2.ebuild b/sci-biology/trnascan-se/trnascan-se-1.23-r2.ebuild
deleted file mode 100644
index c16a96cc551..00000000000
--- a/sci-biology/trnascan-se/trnascan-se-1.23-r2.ebuild
+++ /dev/null
@@ -1,44 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI="3"
-
-inherit eutils multilib toolchain-funcs
-
-DESCRIPTION="tRNA detection in large-scale genome sequences"
-HOMEPAGE="http://lowelab.ucsc.edu/tRNAscan-SE/"
-SRC_URI="mirror://gentoo/${P}.tar.bz2"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="amd64 x86"
-IUSE=""
-
-RDEPEND="dev-lang/perl"
-DEPEND="${RDEPEND}"
-
-src_prepare() {
- epatch "${FILESDIR}"/${P}-glibc-2.10.patch
- epatch "${FILESDIR}"/${P}-ldflags.patch
- sed -e "s%BINDIR = \$(HOME)/bin%BINDIR = ${EPREFIX}/usr/bin%" \
- -e "s%LIBDIR = \$(HOME)/lib/tRNAscan-SE%LIBDIR = ${EPRFIX}/usr/$(get_libdir)/${PN}%" \
- -e "s%MANDIR = \$(HOME)/man%MANDIR = ${EPREFIX}/usr/share/man%" \
- -e "s%CC = gcc%CC = $(tc-getCC)%" \
- -e "s%CFLAGS = -O%CFLAGS = ${CFLAGS}%" \
- -i Makefile || die
-}
-
-src_install() {
- mv tRNAscan-SE.man tRNAscan-SE.man.1 || die
- dobin covels-SE coves-SE eufindtRNA tRNAscan-SE trnascan-1.4 || die
- doman tRNAscan-SE.man.1 || die
- dodoc MANUAL README Release.history || die
- insinto /usr/$(get_libdir)/${PN}/
- doins *.cm gcode.* Dsignal TPCsignal || die
- insinto /usr/share/doc/${PF}
- doins Manual.ps || die
-}
-
-src_test() {
- make PATH="${S}:${PATH}" testrun || die
-}