summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
Diffstat (limited to 'sci-biology/poa/files/poa-2-respect-flags.patch')
-rw-r--r--sci-biology/poa/files/poa-2-respect-flags.patch38
1 files changed, 38 insertions, 0 deletions
diff --git a/sci-biology/poa/files/poa-2-respect-flags.patch b/sci-biology/poa/files/poa-2-respect-flags.patch
new file mode 100644
index 000000000000..fb01f0b5f934
--- /dev/null
+++ b/sci-biology/poa/files/poa-2-respect-flags.patch
@@ -0,0 +1,38 @@
+--- a/Makefile
++++ b/Makefile
+@@ -1,6 +1,3 @@
+-
+-AR=ar rc
+-
+ TARGETS=poa liblpo.a poa_doc libbflag.a
+
+ # align_score.c CAN BE USED TO ADD CUSTOMIZED SCORING FUNCTIONS
+@@ -26,9 +23,8 @@
+ stringptr.o
+
+
+-CC = gcc
+ #CFLAGS= -g -ansi-strict -W -Wall -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.
+-CFLAGS= -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.
++CPPFLAGS+= -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.
+ # -I$(HOME)/lib/include
+ # -DREPORT_MAX_ALLOC
+
+@@ -37,14 +33,14 @@
+
+ liblpo.a: $(LIBOBJECTS)
+ rm -f $@
+- $(AR) $@ $(LIBOBJECTS)
+- ranlib $@
++ $(AR) rc $@ $(LIBOBJECTS)
++ $(RANLIB) $@
+
+
+
+ # NB: LIBRARY MUST FOLLOW OBJECTS OR LINK FAILS WITH UNRESOLVED REFERENCES!!
+ poa: $(OBJECTS) liblpo.a
+- $(CC) -o $@ $(OBJECTS) -lm liblpo.a
++ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ $(OBJECTS) -lm liblpo.a
+
+ what:
+ @echo poa: partial-order based sequence alignment program