diff options
Diffstat (limited to 'sci-biology/samtools')
| -rw-r--r-- | sci-biology/samtools/samtools-1.9-r1.ebuild (renamed from sci-biology/samtools/samtools-1.9.ebuild) | 19 |
1 files changed, 8 insertions, 11 deletions
diff --git a/sci-biology/samtools/samtools-1.9.ebuild b/sci-biology/samtools/samtools-1.9-r1.ebuild index bdcd115aafee..0d0f993895fc 100644 --- a/sci-biology/samtools/samtools-1.9.ebuild +++ b/sci-biology/samtools/samtools-1.9-r1.ebuild @@ -1,11 +1,9 @@ -# Copyright 1999-2018 Gentoo Authors +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 -PYTHON_COMPAT=( python2_7 ) - -inherit autotools python-single-r1 toolchain-funcs +inherit autotools toolchain-funcs DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats" HOMEPAGE="http://www.htslib.org/" @@ -15,22 +13,18 @@ LICENSE="MIT" SLOT="0" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" IUSE="examples" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" RDEPEND=" dev-lang/perl =sci-libs/htslib-${PV}* sys-libs/ncurses:0= - sys-libs/zlib:= - ${PYTHON_DEPS}" -DEPEND="${RDEPEND} - virtual/pkgconfig" + sys-libs/zlib:=" +DEPEND="${RDEPEND}" +BDEPEND="virtual/pkgconfig" src_prepare() { default - python_fix_shebang misc/varfilter.py - # remove bundled htslib rm -r htslib-* || die @@ -45,6 +39,9 @@ src_test() { src_install() { default + # varfilter.py has been retired upstream for being py2 only + rm "${ED}"/usr/bin/varfilter.py || die + if use examples; then dodoc -r examples docompress -x /usr/share/doc/${PF}/examples |