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Diffstat (limited to 'sci-biology/t-coffee/t-coffee-11.00-r1.ebuild')
-rw-r--r--sci-biology/t-coffee/t-coffee-11.00-r1.ebuild56
1 files changed, 0 insertions, 56 deletions
diff --git a/sci-biology/t-coffee/t-coffee-11.00-r1.ebuild b/sci-biology/t-coffee/t-coffee-11.00-r1.ebuild
deleted file mode 100644
index 919287c790f..00000000000
--- a/sci-biology/t-coffee/t-coffee-11.00-r1.ebuild
+++ /dev/null
@@ -1,56 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit eutils flag-o-matic toolchain-funcs
-
-MY_HASH="8cbe486"
-MY_PV="${PV}.${MY_HASH}"
-MY_P="T-COFFEE_distribution_Version_${MY_PV}"
-
-DESCRIPTION="A multiple sequence alignment package"
-HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
-SRC_URI="http://www.tcoffee.org/Packages/Stable/Version_${MY_PV}/${MY_P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="examples"
-
-RDEPEND="
- sci-biology/clustalw
- sci-chemistry/tm-align"
-DEPEND=""
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
- sed \
- -e '/@/s:.*;:\t:g' \
- -e '/Linking/s:$(CC):$(CC) $(CFLAGS) $(LDFLAGS):g' \
- -i t_coffee_source/makefile || die
- epatch \
- "${FILESDIR}"/${P}-mayhem.patch \
- "${FILESDIR}"/${P}-set_proper_dir_permissions.patch
-}
-
-src_compile() {
- [[ $(gcc-version) == "3.4" ]] || \
- [[ $(gcc-version) == "4.1" ]] && \
- append-flags -fno-unit-at-a-time
- emake \
- V=1 \
- CC="$(tc-getCXX)" \
- CFLAGS="${CXXFLAGS} -Wno-write-strings -Wno-unused-result" \
- -C t_coffee_source t_coffee
-}
-
-src_install() {
- dobin t_coffee_source/t_coffee
-
- if use examples; then
- insinto /usr/share/${PN}
- doins -r example
- fi
-}