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* sci-chemistry/gromacs: Version bumpAlexey Shvetsov2015-10-142-0/+286
| | | | Package-Manager: portage-2.2.23
* sci-chemistry/relax: Version BumpJustin Lecher2015-10-122-0/+72
| | | | | Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/relax: Drop oldJustin Lecher2015-10-125-288/+0
| | | | | Package-Manager: portage-2.2.22 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/pymol-plugins-dynamics: Version BumpJustin Lecher2015-10-122-0/+39
| | | | | Package-Manager: portage-2.2.22 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/prody: New PackageJustin Lecher2015-10-123-0/+53
| | | | | | | ebuild written by me Package-Manager: portage-2.2.22 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/platon: Version BumpJustin Lecher2015-10-102-5/+1
| | | | | | | | | drop obsolete patch Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=392061 Package-Manager: portage-2.2.22 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* fix various encoding corruptionMike Frysinger2015-10-101-1/+1
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* Add missing remote-id type=sourceforgeJustin Lecher2015-10-015-6/+19
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/coot: Don't set LD_LIBRARY_PATHJustin Lecher2015-09-251-0/+4
| | | | | Package-Manager: portage-2.2.21 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/coot: Add KEYWORDS backJustin Lecher2015-09-251-1/+1
| | | | | Package-Manager: portage-2.2.21 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* profiles: mask net-chemistry/icm-browser for removal. Bug #466724Dion Moult2015-09-242-4/+2
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* sci-chemistry/clashlist: Drop oldJustin Lecher2015-09-241-25/+0
| | | | | Package-Manager: portage-2.2.21 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/pymol: amd64 stable wrt bug #543020Agostino Sarubbo2015-09-241-1/+1
| | | | | Package-Manager: portage-2.2.20.1 RepoMan-Options: --include-arches="amd64"
* sci-chemistry/clashlist: amd64 stable wrt bug #547384Agostino Sarubbo2015-09-241-1/+1
| | | | | Package-Manager: portage-2.2.20.1 RepoMan-Options: --include-arches="amd64"
* profiles: mask sci-chemistry/babel for removal. Bug #552284Dion Moult2015-09-242-2/+0
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* sci-chemistry/votca-csgapps: version bumpChristoph Junghans2015-09-232-0/+33
| | | | Package-Manager: portage-2.2.20.1
* sci-chemistry/votca-csg: version bumpChristoph Junghans2015-09-232-0/+117
| | | | Package-Manager: portage-2.2.20.1
* Update hashes in ManifestJustin Lecher2015-09-2325-33/+33
| | | | | | Add missing SHA512 and WHIRLPOOL hashes Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/platon: Version BumpJustin Lecher2015-09-222-6/+6
| | | | | | | Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=392061 Package-Manager: portage-2.2.21 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/probe: Drop oldJustin Lecher2015-09-203-77/+0
| | | | | | | | obsoletes Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=556806 Package-Manager: portage-2.2.20.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/coot: x86 stable wrt bug #529518Agostino Sarubbo2015-09-201-1/+1
| | | | | Package-Manager: portage-2.2.20.1 RepoMan-Options: --include-arches="x86"
* sci-chemistry/probe: x86 stable wrt bug #556816Agostino Sarubbo2015-09-201-1/+1
| | | | | Package-Manager: portage-2.2.20.1 RepoMan-Options: --include-arches="x86"
* sci-chemistry: Update ChecksumsJustin Lecher2015-09-1515-17/+17
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/pymol-plugins-psico: Drop optional depJustin Lecher2015-09-151-1/+0
| | | | | Package-Manager: portage-2.2.20.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/coot: Version BumpJustin Lecher2015-09-156-0/+283
| | | | | Package-Manager: portage-2.2.20.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* ADd missing remote-id entriesJustin Lecher2015-09-071-0/+1
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/probe: ppc stable wrt bug #556816Agostino Sarubbo2015-09-061-1/+1
| | | | | Package-Manager: portage-2.2.20.1 RepoMan-Options: --include-arches="ppc"
* sci-chemistry/pdb-tools: Fixing HOMEPAGE move due to code.google.com shutdownTobias Klausmann2015-09-012-2/+2
| | | | Package-Manager: portage-2.2.20.1
* sci-chemistry/mdanalysis: Fixing HOMEPAGE move due to code.google.com shutdownTobias Klausmann2015-09-011-1/+1
| | | | Package-Manager: portage-2.2.20.1
* sci-chemistry/nmrglue: Drop unnecessary dependency and old versionJustin Lecher2015-09-013-27/+0
| | | | | Package-Manager: portage-2.2.20.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/pymol: React on subslot changesJustin Lecher2015-08-273-3/+3
| | | | | Package-Manager: portage-2.2.20.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sys-libs/ncurses: move to SLOT=0 #557472Mike Frysinger2015-08-262-2/+2
| | | | | Use SLOT=0 for installing of main development files like other packages so we can use other SLOTs for installing SONAME libs for binary packages.
* Revert DOCTYPE SYSTEM https changes in metadata.xmlMike Gilbert2015-08-24135-135/+135
| | | | | | | repoman does not yet accept the https version. This partially reverts eaaface92ee81f30a6ac66fe7acbcc42c00dc450. Bug: https://bugs.gentoo.org/552720
* Convert URIs for googlecode.com to httpsJustin Lecher2015-08-247-11/+11
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Enable https for all google URIsJustin Lecher2015-08-245-5/+5
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Use https by defaultJustin Lecher2015-08-242-2/+2
| | | | | | Convert all URLs for sites supporting encrypted connections from http to https Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Use https by defaultJustin Lecher2015-08-24161-167/+167
| | | | | | Convert all URLs for sites supporting encrypted connections from http to https Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/gromacs: version bumpChristoph Junghans2015-08-202-0/+271
| | | | Package-Manager: portage-2.2.20.1
* sci-chemistry/prodecomp: Fix launcher and double PrefixJustin Lecher2015-08-171-2/+3
| | | | | Package-Manager: portage-2.2.20.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/autodock_vina: Require thread support in boost, bug #557822Justin Lecher2015-08-161-3/+3
| | | | | Package-Manager: portage-2.2.20.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/dssp: Add missing USE dep, bug #557840 drop old patchesJustin Lecher2015-08-153-117/+1
| | | | | Package-Manager: portage-2.2.20.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* proj/gentoo: Initial commitRobin H. Johnson2015-08-08814-0/+39094
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed