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* Drop sci-chemistry/pymol-apbs-pluginJustin Lecher2016-02-228-474/+0
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Remove masked for removal packagesPacho Ramos2016-02-208-419/+0
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* sci-chemistry/coot: Chop DESCRIPTION to 80 charsJustin Lecher2016-02-142-3/+3
| | | | | Package-Manager: portage-2.2.27 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/molden: Version BumpJustin Lecher2016-02-112-0/+76
| | | | | | | Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=509854 Package-Manager: portage-2.2.27 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/molden: Fix SRC_URI to new locationJustin Lecher2016-02-112-2/+2
| | | | | | | Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=509854 Package-Manager: portage-2.2.27 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/molden: Fix HOMEPAGE to new locationJustin Lecher2016-02-112-4/+4
| | | | | | | Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=509854 Package-Manager: portage-2.2.27 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/psi: Chop DESCRIPTION to 80 charsJustin Lecher2016-02-091-1/+1
| | | | | Package-Manager: portage-2.2.27 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/psi: Fix multiple build failuresJustin Lecher2016-02-092-3/+41
| | | | | | | | | | | | * Use byacc instead of bison * Depend on correct SLOT of libint * Fix format-security problems Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=430588 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=574068 Package-Manager: portage-2.2.27 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Set appropriate maintainer types in metadata.xml (GLEP 67)Michał Górny2016-01-24114-130/+130
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* Replace all herds with appropriate projects (GLEP 67)Michał Górny2016-01-24114-114/+456
| | | | | Replace all uses of herd with appropriate project maintainers, or no maintainers in case of herds requested to be disbanded.
* Unify quoting in metadata.xml files for machine processingMichał Górny2016-01-2410-10/+10
| | | | | | | Force unified quoting in all metadata.xml files since lxml does not preserve original use of single and double quotes. Ensuring unified quoting before the process allows distinguishing the GLEP 67-related metadata.xml changes from unrelated quoting changes.
* sci-chemistry/gsim: Add CPU_FLAGS_X86=sse3 and depend on itDavid Seifert2016-01-241-0/+80
| | | | | | | | | | | Gentoo-Bug: 555972 * Filter flags disabling SSE3 support. It is the user's responsibility to ensure they have SSE3 support and it to be enabled at compile time * EAPI=6 * Port from 'qt4-r2' to 'qmake-utils' Package-Manager: portage-2.2.27
* sci-chemistry/mpqc: Fix -Werror=format-security errorsDavid Seifert2016-01-242-0/+177
| | | | | | | Gentoo-Bug: 542278 Also update to EAPI=6. Package-Manager: portage-2.2.27
* sci-chemistry/votca-csg: remove oldMichael Palimaka2016-01-233-91/+0
| | | | Package-Manager: portage-2.2.27
* sci-chemistry/votca-csgapps: remove oldMichael Palimaka2016-01-232-32/+0
| | | | Package-Manager: portage-2.2.27
* Drop support for Java on ppc across the treeJames Le Cuirot2016-01-161-2/+2
| | | | Sorry! *sniff*
* version bumpChristoph Junghans2016-01-152-2/+2
| | | | Package-Manager: portage-2.2.26
* version bumpChristoph Junghans2016-01-152-5/+5
| | | | Package-Manager: portage-2.2.26
* Drop myself as maintainerJustin Lecher2016-01-0956-174/+2
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Update remote-ids in metadata.xmlJustin Lecher2016-01-072-4/+8
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/mongochem: change dep for mongo cxx driver ebuildUltrabug2016-01-031-2/+2
| | | | Package-Manager: portage-2.2.25
* sci-chemistry/avogadro2: Import from science overlayJustin Lecher2015-12-296-0/+281
| | | | | Package-Manager: portage-2.2.26 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/molequeue: Version bump, required to unbundle third-party ↵Ted Tanberry2015-12-282-0/+65
| | | | | | libraries. Package-Manager: portage-2.2.26
* Revert "sci-chemistry/avogadro: Drop old"Justin Lecher2015-12-283-0/+95
| | | | This reverts commit 0db137e6da3ecb14cebbb6ac595c235cba1c38b1.
* sci-chemistry/avogadro: Any version of eigen worksJustin Lecher2015-12-281-1/+2
| | | | | Package-Manager: portage-2.2.26 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/avogadro: Version Bump & fix linking problems with openbabelJustin Lecher2015-12-288-0/+175
| | | | | | | Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=569896 Package-Manager: portage-2.2.26 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/avogadro: Drop oldJustin Lecher2015-12-283-95/+0
| | | | | Package-Manager: portage-2.2.26 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/gelemental: Chop DESCRIPTION to 80 charsJustin Lecher2015-12-271-2/+2
| | | | | Package-Manager: portage-2.2.26 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/gelemental: Drop oldJustin Lecher2015-12-271-51/+0
| | | | | Package-Manager: portage-2.2.26 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/gelemental: x86 stable wrt bug #568744Agostino Sarubbo2015-12-251-1/+1
| | | | | | Package-Manager: portage-2.2.24 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-chemistry/gelemental: amd64 stable wrt bug #568744Agostino Sarubbo2015-12-251-1/+1
| | | | | | Package-Manager: portage-2.2.24 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-chemistry/tm-align: Version BumpJustin Lecher2015-12-252-0/+26
| | | | | Package-Manager: portage-2.2.26 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/gperiodic: Version Bump and handle LINGUASJustin Lecher2015-12-204-0/+142
| | | | | | | | Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=568852 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=403649 Package-Manager: portage-2.2.26 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/gperiodic: Clean oldJustin Lecher2015-12-201-52/+0
| | | | | Package-Manager: portage-2.2.26 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/gelemental: Fix building with latest glibmm/libsigc++ (#566450)Pacho Ramos2015-12-191-2/+3
| | | | Package-Manager: portage-2.2.26
* sci-chemistry/pymol-plugins-emovie: Bump to EAPI=5 and python-r1.eclassJustin Lecher2015-12-102-35/+17
| | | | | | | Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=567928 Package-Manager: portage-2.2.26 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Cleanup unused Manifest entriesJustin Lecher2015-11-302-9/+4
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/massxpert: remove oldMichael Palimaka2015-11-173-141/+0
| | | | Package-Manager: portage-2.2.24
* sci-chemistry/pymol: Always use included apbs pluginJustin Lecher2015-11-125-122/+8
| | | | | | | | | Correctly block files collisions Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=565600 Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/sparky: Chop DESCRIPTIONJustin Lecher2015-11-111-1/+1
| | | | | Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/sparky: Adopt to ABIFLAGS change in pythonJustin Lecher2015-11-111-4/+6
| | | | | Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/openbabel-python: Adopt to ABIFLAGS change in pythonJustin Lecher2015-11-111-4/+4
| | | | | Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/pymol: x86 stable wrt bug #565494Agostino Sarubbo2015-11-111-1/+1
| | | | | Package-Manager: portage-2.2.20.1 RepoMan-Options: --include-arches="x86"
* sci-chemistry/pymol: amd64 stable wrt bug #565494Agostino Sarubbo2015-11-111-1/+1
| | | | | Package-Manager: portage-2.2.20.1 RepoMan-Options: --include-arches="amd64"
* sci-chemistry/pymol: Version BumpJustin Lecher2015-11-112-0/+114
| | | | | Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/pymol: Drop oldJustin Lecher2015-11-113-103/+1
| | | | | | | | | obsoletes Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=543018 Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/pymol: x86 stable wrt bug #543020Agostino Sarubbo2015-11-111-1/+1
| | | | | Package-Manager: portage-2.2.20.1 RepoMan-Options: --include-arches="x86"
* Sanitize virtual namespace of python packagesJustin Lecher2015-11-104-4/+4
| | | | | | Rename virtual/MODULE to virtual/python-MODULE Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/gromacs: Version bump! =DAlexey Shvetsov2015-11-092-0/+271
| | | | Package-Manager: portage-2.2.24
* sci-chemistry/openbabel: Only configure WxGtk with USE=wxwidgetsJustin Lecher2015-11-071-1/+1
| | | | | | | Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=565040 Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org>