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* sci-libs/dealii: fix QA issueMatthias Maier2019-08-142-1/+6
| | | | | | Closes: https://bugs.gentoo.org/692082 Package-Manager: Portage-2.3.71, Repoman-2.3.17 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* */*: update e-mail address of Sergey Torokhovband-a-prend2019-08-141-1/+1
| | | | | | | | | | Change maintainer email of dev-util/codeblocks and sci-libs/cantera packages. Bug: https://bugs.gentoo.org/672596 Signed-off-by: Sergey Torokhov <torokhov-s-a@yandex.ru> Closes: https://github.com/gentoo/gentoo/pull/12702 Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/dlib: Add missing PYTHON_REQUIRED_USEMichał Górny2019-08-131-0/+1
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/trilinos: Fix installMatthias Maier2019-08-131-1/+3
| | | | | | Closes: https://bugs.gentoo.org/691888 Package-Manager: Portage-2.3.71, Repoman-2.3.17 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/ssm: RemoveMatt Turner2019-08-093-40/+0
| | | | | Closes: https://bugs.gentoo.org/639760 Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/monomer-db: RemoveMatt Turner2019-08-093-37/+0
| | | | | Closes: https://bugs.gentoo.org/639760 Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/mmdb: RemoveMatt Turner2019-08-097-112/+0
| | | | | Closes: https://bugs.gentoo.org/639760 Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/libccp4: RemoveMatt Turner2019-08-093-38/+0
| | | | | Closes: https://bugs.gentoo.org/639760 Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/gpp4: RemoveMatt Turner2019-08-093-38/+0
| | | | | Closes: https://bugs.gentoo.org/639760 Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/coot-data: RemoveMatt Turner2019-08-093-40/+0
| | | | | Closes: https://bugs.gentoo.org/639760 Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/clipper: RemoveMatt Turner2019-08-093-73/+0
| | | | | Closes: https://bugs.gentoo.org/639760 Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/cctbx: RemoveMatt Turner2019-08-0911-1335/+0
| | | | | Closes: https://bugs.gentoo.org/639760 Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/dcmtk: remove old 3.6.4Joonas Niilola2019-08-091-86/+0
| | | | | Package-Manager: Portage-2.3.71, Repoman-2.3.17 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/dcmtk: FHS-compliant config file pathsHorea Christian2019-08-091-0/+87
| | | | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Horea Christian <chr@chymera.eu> Closes: https://github.com/gentoo/gentoo/pull/12656 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/cantera: Fix missing RDEPEND="${PYTHON_DEPS}" warningband-a-prend2019-08-091-1/+1
| | | | | | | | Closes: https://bugs.gentoo.org/691404 Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Closes: https://github.com/gentoo/gentoo/pull/12650 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/dcmtk: version bump 3.6.4Horea Christian2019-08-082-0/+87
| | | | | | | Package-Manager: Portage-2.3.66, Repoman-2.3.12 Signed-off-by: Horea Christian <chr@chymera.eu> Closes: https://github.com/gentoo/gentoo/pull/12024 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/tensorflow-estimator: bump to 1.14.0Jason Zaman2019-08-072-1/+1
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/tensorflow-estimator: update copyright lineJason Zaman2019-08-072-2/+2
| | | | | | Closes: https://bugs.gentoo.org/691646 Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/tensorflow: update copyright lineJason Zaman2019-08-072-2/+2
| | | | | | Bug: https://bugs.gentoo.org/691646 Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/trilinos: fix automagic dependencyMatthias Maier2019-08-061-0/+1
| | | | | Package-Manager: Portage-2.3.71, Repoman-2.3.17 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: fix metadata.xmlMatthias Maier2019-08-061-2/+1
| | | | | Package-Manager: Portage-2.3.71, Repoman-2.3.17 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/dealii: [QA] fix package atom in metadata.xmlMatthias Maier2019-08-051-1/+1
| | | | | Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/dealii: ebuild maintenanceMatthias Maier2019-08-053-12/+60
| | | | | | | | | | | * remove local description in metadata * avoid warning about unused variable * do not export LDFLAGS in pc files Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: ebuild maintenanceMatthias Maier2019-08-052-7/+5
| | | | | | | | | | | | | * fix rm/mv paths to clean up installation * remove obsolete configuration options * skip setting an RPATH * fix metadata Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: fix typoMatthias Maier2019-08-051-1/+1
| | | | | Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/dealii: package migration from ::science overlayMatthias Maier2019-08-054-0/+337
| | | | | Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: package migration from ::science overlayMatthias Maier2019-08-053-0/+260
| | | | | Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/gmsh: package migration from ::science overlayMatthias Maier2019-08-053-0/+95
| | | | | Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/med: package migration from ::science overlayMatthias Maier2019-08-053-0/+61
| | | | | | | | | | * version bump * new upsteam website and repo * EAPI=7 * fixup installation Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/openblas: use pkg_setup to do the build env and checks.Benda Xu2019-08-041-26/+21
| | | | | | Closes: https://github.com/gentoo/gentoo/pull/12576 Package-Manager: Portage-2.3.69, Repoman-2.3.12 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/openblas: Allow custom CFLAGS and add fortran checks.Benda Xu2019-08-042-9/+23
| | | | | | | | | Drop unused USE flags. Suggested-By: Hasan ÇALIŞIR <hasan.calisir@psauxit.com> Closes: https://github.com/gentoo/gentoo/pull/12576 Package-Manager: Portage-2.3.69, Repoman-2.3.12 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/scikits_timeseries: Works with py3.7Alexey Shvetsov2019-08-031-0/+47
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-libs/scikits_optimization: Works with py3.7Alexey Shvetsov2019-08-031-0/+31
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-libs/scikits_learn: Works with py3.7Alexey Shvetsov2019-08-031-0/+106
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-libs/scikits_image: Works with py3.7Alexey Shvetsov2019-08-031-0/+57
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-libs/scikits: Works with py3.7Alexey Shvetsov2019-08-031-0/+34
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-libs/tensorflow-1.14.0-r1: Fix build issuesJason Zaman2019-08-035-6/+146
| | | | | | | | | | | | | | - Header paths were mangled - Jsoncpp-1.9 build error - Newer GRPC needed a bumped google-cloud-cpp dep - Build failed with python2 if future was not installed - Add tensorflow_cc pkgconfig file Closes: https://bugs.gentoo.org/688594 Closes: https://bugs.gentoo.org/689282 Closes: https://bugs.gentoo.org/690212 Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/{blis,mkl-rt}: Add Gentoo Science Project as maintainer.Benda Xu2019-08-012-0/+8
| | | | | | Closes: https://bugs.gentoo.org/691128 Package-Manager: Portage-2.3.69, Repoman-2.3.12 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/libcerf: Drop 1.3 and 1.4Andreas Sturmlechner2019-07-313-44/+0
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/libcerf: x86 stable wrt bug #685690Agostino Sarubbo2019-07-311-1/+1
| | | | | | Package-Manager: Portage-2.3.66, Repoman-2.3.16 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/cantera: remove 2.4.0-r0 as request by proxy-maintainerMatthias Maier2019-07-302-157/+0
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: remove dangling whitespace in metadata.xmlMatthias Maier2019-07-301-1/+1
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: drop oldMatthias Maier2019-07-307-716/+0
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: fix LICENSE installation patchesband-a-prend2019-07-302-2/+12
| | | | | | | | | Sundials 4.x add NOTICE files besides LICENSE files and current fix-licence-patches contain only fix for installation path of NOTICE files and don't fix payhs for LICENSE. Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/shapelib: arm64 stableAaron Bauman2019-07-291-2/+2
| | | | | | Signed-off-by: Aaron Bauman <bman@gentoo.org> Package-Manager: Portage-2.3.69, Repoman-2.3.16 RepoMan-Options: --include-arches="arm64"
* sci-libs/libcerf: arm stable wrt bug #685690Mikle Kolyada2019-07-291-1/+1
| | | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 RepoMan-Options: --include-arches="arm" Signed-off-by: Mikle Kolyada <zlogene@gentoo.org>
* sci-libs/lmfit: arm stable wrt bug #687240Mikle Kolyada2019-07-281-1/+1
| | | | | | Package-Manager: Portage-2.3.66, Repoman-2.3.16 RepoMan-Options: --include-arches="arm" Signed-off-by: Mikle Kolyada <zlogene@gentoo.org>
* sci-libs/openblas-0.3.6: add index-64bit support.Mo Zhou2019-07-242-3/+16
| | | | | | | Closes: https://github.com/gentoo/gentoo/pull/12475 Signed-off-by: Mo Zhou <cdluminate@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/openblas: remove 0.3.5 version.Mo Zhou2019-07-242-106/+0
| | | | | Signed-off-by: Mo Zhou <cdluminate@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/libgeotiff: Drop 1.4.0Andreas Sturmlechner2019-07-232-74/+0
| | | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org> Package-Manager: Portage-2.3.66, Repoman-2.3.11