From f041d5dfa389230ce31466c37362bd7931748043 Mon Sep 17 00:00:00 2001 From: David Seifert Date: Mon, 14 Feb 2022 00:28:38 +0100 Subject: sci-biology/embassy-hmmer: update EAPI 7 -> 8 Signed-off-by: David Seifert --- .../embassy-hmmer-2.3.2.660-r1.ebuild | 24 ++++++++++++++++++++++ .../embassy-hmmer/embassy-hmmer-2.3.2.660.ebuild | 21 ------------------- .../embassy-hmmer-2.3.2.650_fix-build-system.patch | 4 ++-- 3 files changed, 26 insertions(+), 23 deletions(-) create mode 100644 sci-biology/embassy-hmmer/embassy-hmmer-2.3.2.660-r1.ebuild delete mode 100644 sci-biology/embassy-hmmer/embassy-hmmer-2.3.2.660.ebuild (limited to 'sci-biology') diff --git a/sci-biology/embassy-hmmer/embassy-hmmer-2.3.2.660-r1.ebuild b/sci-biology/embassy-hmmer/embassy-hmmer-2.3.2.660-r1.ebuild new file mode 100644 index 000000000000..964e637d657c --- /dev/null +++ b/sci-biology/embassy-hmmer/embassy-hmmer-2.3.2.660-r1.ebuild @@ -0,0 +1,24 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +EBO_DESCRIPTION="HMMER wrapper - sequence analysis with profile HMMs" + +inherit autotools emboss-r3 + +KEYWORDS="~amd64 ~x86 ~x86-linux" + +RDEPEND="sci-biology/hmmer:2" + +S="${WORKDIR}/HMMER-2.3.2.650" +PATCHES=( + "${FILESDIR}"/${PN}-2.3.2.650_fix-build-system.patch + # sci-biology/hmmer:2 has renamed commandline program names + "${FILESDIR}"/${PN}-2.3.2.660-slotted-hmmer2.patch +) + +src_prepare() { + default + eautoreconf +} diff --git a/sci-biology/embassy-hmmer/embassy-hmmer-2.3.2.660.ebuild b/sci-biology/embassy-hmmer/embassy-hmmer-2.3.2.660.ebuild deleted file mode 100644 index c22ff4141c2f..000000000000 --- a/sci-biology/embassy-hmmer/embassy-hmmer-2.3.2.660.ebuild +++ /dev/null @@ -1,21 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -EBO_DESCRIPTION="HMMER wrapper - sequence analysis with profile HMMs" - -EBO_EAUTORECONF=1 - -inherit emboss-r2 - -KEYWORDS="~amd64 ~x86 ~x86-linux" - -RDEPEND="sci-biology/hmmer:2" - -S="${WORKDIR}/HMMER-2.3.2.650" -PATCHES=( - "${FILESDIR}"/${PN}-2.3.2.650_fix-build-system.patch - # sci-biology/hmmer:2 has renamed commandline program names - "${FILESDIR}"/${PN}-2.3.2.660-slotted-hmmer2.patch -) diff --git a/sci-biology/embassy-hmmer/files/embassy-hmmer-2.3.2.650_fix-build-system.patch b/sci-biology/embassy-hmmer/files/embassy-hmmer-2.3.2.650_fix-build-system.patch index 303aacda46cd..dd1660dfbd5b 100644 --- a/sci-biology/embassy-hmmer/files/embassy-hmmer-2.3.2.650_fix-build-system.patch +++ b/sci-biology/embassy-hmmer/files/embassy-hmmer-2.3.2.650_fix-build-system.patch @@ -1,5 +1,5 @@ ---- a/configure.ac -+++ b/configure.ac +--- a/configure.in ++++ b/configure.in @@ -635,33 +635,6 @@ -- cgit v1.2.3-65-gdbad