From 4fada4576c7247539d4fd77238ad1c8e3a410620 Mon Sep 17 00:00:00 2001 From: David Seifert Date: Sat, 7 May 2016 18:32:50 +0200 Subject: sci-libs/shogun: Version bump to latest 4.1.0 release Package-Manager: portage-2.2.28 --- sci-libs/shogun/Manifest | 2 + .../files/shogun-4.1.0-fix-buildsystem.patch | 81 +++++++++++++ sci-libs/shogun/shogun-4.1.0.ebuild | 127 +++++++++++++++++++++ 3 files changed, 210 insertions(+) create mode 100644 sci-libs/shogun/files/shogun-4.1.0-fix-buildsystem.patch create mode 100644 sci-libs/shogun/shogun-4.1.0.ebuild (limited to 'sci-libs') diff --git a/sci-libs/shogun/Manifest b/sci-libs/shogun/Manifest index 11c82bf05c0e..2cb0ed795c5a 100644 --- a/sci-libs/shogun/Manifest +++ b/sci-libs/shogun/Manifest @@ -1,6 +1,8 @@ DIST shogun-1.1.0.tar.bz2 3485714 SHA256 9f69638f0bc18995358c38cd6eed6437e6b90c1fceab7c6e64c9739b7e6cc40b SHA512 853168e3d68ad02ef543391b78c51682d004af46acddfa09a76b41e373e27199fc9be0598892207e116a82f24437e3f1c0dc97c3e28ca32879594fbe112bd157 WHIRLPOOL dd044ff2cc9fd9376b80f1efd9bbcf901b11765a2f85eb2325ddd640ea547e513df8c9da548634e49758ef124147666f86b6b4082e118c6d35ef2d5010527cf9 DIST shogun-2.0.0.tar.bz2 4106437 SHA256 b18e30515b9f4432d02602d0dd66dbc57c70a46f71636275071afaee94e245ee SHA512 e7c8d515afbcb3198aade32d2962e8d94b669b9c79ddbcd7425f04bbb0379803f7353c50ba8897356842cddb401d303fefaf8a7f9dd6a2e751e176deba1e46f1 WHIRLPOOL aa9ef89f28acc012ee2894c4ff6858f7bf01585d02160d5b2df33159c7c87593ea352833765a7a78cc0ed16fd10713d285eb711606f0e3771ec685778f703570 DIST shogun-3.2.0.tar.bz2 4217245 SHA256 bc416b615ed90aef80c58a30546c5e2da779347bebb8742ecf11657073fc8f72 SHA512 7c420da7bf10c8971954964bce4dc13a8f64c6ff2a0976293f54947414ad2fe7171b1747cef3e2ceb969cf936d8fe862e940582f642cd2367897cda3191b186b WHIRLPOOL bce007c01ebee0e225d5cf858e042561a540416b349015ac566cce82b77096e8206b2f9e51572d9ee8149651a39aa30d6438b28d37ba43eb5aba593b10c5e497 +DIST shogun-4.1.0.tar.bz2 2908955 SHA256 0eb313a95606edee046768a4577d63f32f7ccce340bed7bf0ff0d69225567185 SHA512 01950d5186a94735df5331752e1b97a5464015973ddba38a70bc977f9872b3aad02b162ae87919631cce56d1f10b0bea1fa7b463bf959816e5a15a726214f52a WHIRLPOOL 300bd0d887fe8ee4a1ac2aca7f3fbaebd4344dcffe2b20f9b5bb05e83d6973e8a98e54a216d99329c03eea2c02666c557a3c50ff7e11556298d119b8c262f762 DIST shogun-data-0.3.tar.bz2 126676026 SHA256 34272e3f5e6b6989a4941b925ab3a9cd1525d73180681884e948a673aff4ef89 SHA512 92c7e7dae1df5a7a79428a7f2116b1d9d825a37d4145edfdff1fb7b707853eab19ffe848c4ae2bc2338a93373e78c7cae4087df260411a9576b031e7a6f0de95 WHIRLPOOL 24987580c967b05e61ee5402fe30701cabe17d7ffb29b4966ff0abd0d03e197b928f018e617e254395c6939f93de3e397f5ce7df7c3d4ae7dfe4e782c345fe85 DIST shogun-data-0.4.tar.bz2 127377123 SHA256 103ef944c7211f64957833cd6ace85e32629d73ef286273424e239fa454ecfcc SHA512 c178f6d5d8e4b6b6a94b74da5c133b01e83a1d4c7bf5d0fd66b4812b259934dbc998cfc1ef64f19b17b5099e8c389b8e359e69f1cc1bef6b82b940dc97cac46d WHIRLPOOL cef5d84f342523bad8b810fa3018669e9cd838c7c45bb37b8e7308dce448dc9b98f9aa6716aa724d64746539ef9c041a71cd2f3a1af71ed1077d276a192573d5 DIST shogun-data-0.8.tar.bz2 261905079 SHA256 a2a0c8ccd754f0b893d97d77cfb60e25fcdb4e7033731434fb07e5483514a047 SHA512 9ea48706aae5ca116e8cf3507d1fcd06e24a8384abe6f2ebaf3c81735237d3beceee26ce5af97b85af24409eb47da684f7e7a56c0800a82c40ed214e6382978f WHIRLPOOL 3a3120a8e982c90c670ec0c206635abdcb152ae5f312172ec58ae21e1ee11f15c406b382bd3b8e8a63300302290590b83a977bd4d90375160ceb8ae516409c12 +DIST shogun-data-0.9.tar.bz2 287533841 SHA256 691dd37ccc9bdd4f56d6b7a8e061e80567c241219d70210f8148bc4b7b815559 SHA512 ab501640e2db650603899c857866b451fac5c7bbbc7b4ef98559581928869cea49aa326dfca1bb398eee7ebc8843dcc8ee3105c9f462718f1af672aac6b9340a WHIRLPOOL 19aa7a6d84be9ac7d8aaf7fb12747e17e0ba5a7ec8770b83cc1833b07cd1c6c397684a96eb8ebe709d544967ffaf23bcfbeea52dc8ddedf487fcf54a6d2b3ef7 diff --git a/sci-libs/shogun/files/shogun-4.1.0-fix-buildsystem.patch b/sci-libs/shogun/files/shogun-4.1.0-fix-buildsystem.patch new file mode 100644 index 000000000000..e244c94e8e4c --- /dev/null +++ b/sci-libs/shogun/files/shogun-4.1.0-fix-buildsystem.patch @@ -0,0 +1,81 @@ +Remove CFLAGS/CXXFLAGS setting which is not desired in Gentoo + +--- shogun-4.1.0/cmake/FindAtlas.cmake ++++ shogun-4.1.0/cmake/FindAtlas.cmake +@@ -20,10 +20,10 @@ + endif() + unset(CMAKE_REQUIRED_LIBRARIES CACHE) + else() +- find_file(ATLAS_LAPACK liblapack.so.3 PATHS /usr/lib/atlas /usr/lib64/atlas) +- find_library(ATLAS_LAPACK NAMES lapack) +- set(CMAKE_REQUIRED_LIBRARIES ${LAPACK_LIBRARIES} ${ATLAS_CBLAS}) +- check_library_exists("${ATLAS_LAPACK}" clapack_dpotrf "" FOUND_CLAPACK) ++ # find_file(ATLAS_LAPACK liblapack.so.3 PATHS /usr/lib/atlas /usr/lib64/atlas) ++ # find_library(ATLAS_LAPACK NAMES lapack) ++ # set(CMAKE_REQUIRED_LIBRARIES ${LAPACK_LIBRARIES} ${ATLAS_CBLAS}) ++ check_library_exists("${ATLAS_LIBRARIES}" clapack_dpotrf "" FOUND_CLAPACK) + if(NOT FOUND_CLAPACK) + unset(ATLAS_LAPACK CACHE) + endif() +--- shogun-4.1.0/CMakeLists.txt ++++ shogun-4.1.0/CMakeLists.txt +@@ -23,15 +23,6 @@ + SET(EIGEN_VERSION_MINIMUM 3.1.2) + SET(VIENNACL_VERSION_MINIMUM 1.5.0) + +-# Store system's or distribution's C[XX]FLAGS. +-SET(SYSTEM_C_FLAGS "${CMAKE_C_FLAGS}") +-SET(SYSTEM_CXX_FLAGS "${CMAKE_CXX_FLAGS}") +-STRING(TOUPPER "${CMAKE_BUILD_TYPE}" BUILD_TYPE_UC) +-IF(NOT ("${BUILD_TYPE_UC}" STREQUAL "DISTRIBUTION")) +- SET(CMAKE_C_FLAGS "") +- SET(CMAKE_CXX_FLAGS "") +-ENDIF(NOT ("${BUILD_TYPE_UC}" STREQUAL "DISTRIBUTION")) +- + # CCACHE + OPTION(ENABLE_CCACHE "Enable ccache for compilation" ON) + FIND_PACKAGE(CCache) +@@ -145,20 +136,8 @@ + SET(COMPILER_WARNINGS "-Wall -Wno-unused-parameter -Wformat -Wformat-security -Wparentheses -Wshadow -Wno-unknown-pragmas -Wno-deprecated") + ENDIF() + +-IF(CMAKE_COMPILER_IS_GNUCXX) +- SET(RELEASE_COMPILER_FLAGS "-fexpensive-optimizations -frerun-cse-after-loop -fcse-follow-jumps -finline-functions -fschedule-insns2 -fthread-jumps -fforce-addr -fstrength-reduce -funroll-loops -mfpmath=sse") +-ELSEIF("${CMAKE_CXX_COMPILER_ID}" STREQUAL "Clang") +- SET(RELEASE_COMPILER_FLAGS "-funroll-loops") +-ENDIF() +-SET(SWIG_CXX_COMPILER_FLAGS "-O0 -g") + SET(CMAKE_C_FLAGS "${COMPILER_WARNINGS} ${CMAKE_C_FLAGS}") + SET(CMAKE_CXX_FLAGS "${COMPILER_WARNINGS} ${CMAKE_CXX_FLAGS}") +-SET(CMAKE_C_FLAGS_RELEASE "-O3 ${RELEASE_COMPILER_FLAGS}") +-SET(CMAKE_CXX_FLAGS_RELEASE "-O3 ${RELEASE_COMPILER_FLAGS}") +-SET(CMAKE_C_FLAGS_DISTRIBUTION "-O2") +-SET(CMAKE_CXX_FLAGS_DISTRIBUTION "-O2") +-SET(CMAKE_C_FLAGS_DEBUG "-g") +-SET(CMAKE_CXX_FLAGS_DEBUG "-g") + + OPTION(ENABLE_COVERAGE "Enable code coverage" OFF) + IF(ENABLE_COVERAGE) +@@ -881,21 +860,7 @@ + OPTION(USE_SWIG_DIRECTORS "Enable SWIG director classes" OFF) + + # Respect system's or distribution's C[XX]FLAGS. +-OPTION(SWIG_WITH_SYSTEM_CFLAGS "Enable system's C[XX]FLAGS for compilation of swig-binaries" ON) +- +-IF(NOT ("${BUILD_TYPE_UC}" STREQUAL "DISTRIBUTION")) +- SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${SYSTEM_C_FLAGS}") +- SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${SYSTEM_CXX_FLAGS}") +-ENDIF(NOT ("${BUILD_TYPE_UC}" STREQUAL "DISTRIBUTION")) +- +-IF(SWIG_WITH_SYSTEM_CFLAGS) +- SET(SWIG_CXX_COMPILER_FLAGS "${SWIG_CXX_COMPILER_FLAGS} ${SYSTEM_CXX_FLAGS}") +-ENDIF(SWIG_WITH_SYSTEM_CFLAGS) +- +-OPTION(REDUCE_SWIG_DEBUG "Reduce debuginfo when compiling interfaces" OFF) +-IF(REDUCE_SWIG_DEBUG) +- SET(SWIG_CXX_COMPILER_FLAGS "${SWIG_CXX_COMPILER_FLAGS} -g1") +-ENDIF(REDUCE_SWIG_DEBUG) ++SET(SWIG_CXX_COMPILER_FLAGS "${CMAKE_CXX_FLAGS}") + + # python modular + IF (PythonModular OR PythonStatic) diff --git a/sci-libs/shogun/shogun-4.1.0.ebuild b/sci-libs/shogun/shogun-4.1.0.ebuild new file mode 100644 index 000000000000..651f7bbc8652 --- /dev/null +++ b/sci-libs/shogun/shogun-4.1.0.ebuild @@ -0,0 +1,127 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +PYTHON_COMPAT=( python2_7 python3_{4,5} ) + +inherit cmake-utils flag-o-matic python-single-r1 toolchain-funcs versionator + +MYPV=$(get_version_component_range 1-2) +MYPD=${PN}-data-0.9 + +DESCRIPTION="Large Scale Machine Learning Toolbox" +HOMEPAGE="http://shogun-toolbox.org/" +SRC_URI=" + ftp://shogun-toolbox.org/shogun/releases/${MYPV}/sources/${P}.tar.bz2 + test? ( ftp://shogun-toolbox.org/shogun/data/${MYPD}.tar.bz2 ) + examples? ( ftp://shogun-toolbox.org/shogun/data/${MYPD}.tar.bz2 )" + +LICENSE="GPL-3 free-noncomm" +SLOT="0/16" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc examples lua mono octave python R ruby static-libs test" + +REQUIRED_USE=" + python? ( ${PYTHON_REQUIRED_USE} ) + test? ( python )" + +RDEPEND=" + app-arch/bzip2:= + app-arch/gzip:= + app-arch/lzma:= + app-arch/snappy:= + dev-libs/lzo:= + >=dev-cpp/eigen-3.1 + dev-libs/json-c:= + dev-libs/libxml2:= + dev-libs/protobuf:= + net-misc/curl:= + sci-libs/arpack:= + sci-libs/arprec:= + sci-libs/colpack:= + sci-libs/hdf5:= + sci-libs/nlopt:= + sci-mathematics/glpk:= + sci-mathematics/lpsolve:= + sys-libs/readline:0 + sys-libs/zlib:= + virtual/blas + virtual/cblas + virtual/lapack + lua? ( dev-lang/lua:0 ) + mono? ( dev-lang/mono ) + octave? (