diff -Naur EMBOSS-5.0.0.old/ajax/Makefile.in EMBOSS-5.0.0/ajax/Makefile.in
--- EMBOSS-5.0.0.old/ajax/Makefile.in	2007-07-12 05:53:32.000000000 -0500
+++ EMBOSS-5.0.0/ajax/Makefile.in	2008-01-25 16:43:51.000000000 -0500
@@ -244,7 +244,7 @@
 top_srcdir = @top_srcdir@
 @ISCYGWIN_FALSE@lib_LTLIBRARIES = libajax.la libajaxg.la
 @ISCYGWIN_TRUE@lib_LTLIBRARIES = libajax.la
-@ISAIXIA64_FALSE@@ISSHARED_TRUE@AM_CFLAGS = 
+@ISAIXIA64_FALSE@@ISSHARED_TRUE@AM_CFLAGS = -lm -L../plplot/.libs -leplplot
 @ISAIXIA64_TRUE@@ISSHARED_TRUE@@NEEDAJAX_FALSE@AM_CFLAGS = -Wl,-G -L../plplot/.libs -L.libs -leplplot -lm
 @ISAIXIA64_TRUE@@ISSHARED_TRUE@@NEEDAJAX_TRUE@AM_CFLAGS = -Wl,-G -L../plplot/.libs -L.libs -lajax -leplplot -lm
 @ISCYGWIN_TRUE@AM_LDFLAGS = -no-undefined -Wl,--add-stdcall-alias -Wl,--export-all-symbols -Wl,--enable-auto-import -L../plplot -leplplot
diff -Naur EMBOSS-5.0.0.old/plplot/Makefile.in EMBOSS-5.0.0/plplot/Makefile.in
--- EMBOSS-5.0.0.old/plplot/Makefile.in	2007-07-12 05:53:36.000000000 -0500
+++ EMBOSS-5.0.0/plplot/Makefile.in	2008-01-25 16:42:51.000000000 -0500
@@ -229,7 +229,7 @@
 lib_LTLIBRARIES = libeplplot.la
 @AMPNG_FALSE@@ISAIXIA64_TRUE@@ISSHARED_TRUE@AM_CFLAGS = -Wl,-G -lX11
 @AMPNG_TRUE@@ISAIXIA64_TRUE@@ISSHARED_TRUE@AM_CFLAGS = -Wl,-G -lgd -lpng -lz -lX11 -lm
-@ISAIXIA64_FALSE@@ISSHARED_TRUE@AM_CFLAGS = 
+@ISAIXIA64_FALSE@@ISSHARED_TRUE@AM_CFLAGS = PATCH_PLPLOT
 @ISCYGWIN_TRUE@AM_LDFLAGS = -no-undefined -Wl,--add-stdcall-alias -Wl,--export-all-symbols -Wl,--enable-auto-import -lX11 -lgd -lpng -lz
 INCLUDES = $(X_CFLAGS) -I$(srcdir)/ -I/usr/include/gd -DPREFIX=\"$(prefix)\" -DBUILD_DIR=\"$(srcdir)\" -DDRV_DIR=\"$(srcdir)\" -DEMBOSS_TOP=\"$(EMBOSS_TOP)\"
 PLPLOTSRC = pdfutils.c plargs.c plbox.c plcont.c plcore.c \