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# Copyright 1999-2018 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
inherit autotools flag-o-matic toolchain-funcs
DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
# see also http://www.broadinstitute.org/software/allpaths-lg/blog/?page_id=12
HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz
https://dev.gentoo.org/~mgorny/dist/${P}-patchset.tar.bz2"
LICENSE="MIT"
SLOT="0"
KEYWORDS="~amd64"
RDEPEND="
!sci-biology/allpaths
!sci-biology/vaal"
DEPEND="
${RDEPEND}
dev-libs/boost:="
PATCHES=(
"${WORKDIR}"/${P}-patchset/${P}_fix-buildsystem.patch
"${WORKDIR}"/${P}-patchset/${P}_remove-namespace-std.patch
"${FILESDIR}"/${P}-gcc7.patch
)
pkg_pretend() {
[[ ${MERGE_TYPE} != binary ]] && tc-check-openmp
}
pkg_setup() {
[[ ${MERGE_TYPE} != binary ]] && tc-check-openmp
}
src_prepare() {
default
# Fix building with glibc-2.27, bug #647340
sed -i -e 's/-mieee-fp//' configure.ac || die
eautoreconf
}
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