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| author |   Ted Tanberry <ted.tanberry@gmail.com> | 2015-10-10 21:04:45 +0200 |
|---|---|---|
| committer |   Justin Lecher <jlec@gentoo.org> | 2015-10-14 14:47:58 +0200 |
| commit | ddbfba3594bda0b32f359e057555d477ffbced1e (patch) | |
| tree | ea878cf553eda9db8df5ca4d710fd83d4ef22f54 /sci-biology/bowtie/files/bowtie-1.1.2-tbb-tinythread-missing.patch | |
| parent | x11-libs/gdk-pixbuf: run glibc-specific test only on glibc (diff) | |
| download | gentoo-ddbfba3594bda0b32f359e057555d477ffbced1e.tar.gz gentoo-ddbfba3594bda0b32f359e057555d477ffbced1e.tar.bz2 gentoo-ddbfba3594bda0b32f359e057555d477ffbced1e.zip | |
sci-biology/bowtie: version bump, SLOT major version
sci-biology/bowtie is now SLOTed, in order to allow for a
parallel installation with bowtie2. In addition, the latest
bowtie now supports dev-cpp/tbb with 'tbb' USE flag.
Diffstat (limited to 'sci-biology/bowtie/files/bowtie-1.1.2-tbb-tinythread-missing.patch')
| -rw-r--r-- | sci-biology/bowtie/files/bowtie-1.1.2-tbb-tinythread-missing.patch | 14 |
1 files changed, 14 insertions, 0 deletions
diff --git a/sci-biology/bowtie/files/bowtie-1.1.2-tbb-tinythread-missing.patch b/sci-biology/bowtie/files/bowtie-1.1.2-tbb-tinythread-missing.patch new file mode 100644 index 000000000000..2a081ff297b8 --- /dev/null +++ b/sci-biology/bowtie/files/bowtie-1.1.2-tbb-tinythread-missing.patch @@ -0,0 +1,14 @@ +--- bowtie-1.1.2/Makefile ++++ bowtie-1.1.2/Makefile +@@ -106,10 +106,7 @@ + endif + + OTHER_CPPS = ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp \ +- edit.cpp ebwt.cpp +-ifneq (1,$(WITH_TBB)) +- OTHER_CPPS += tinythread.cpp +-endif ++ edit.cpp ebwt.cpp tinythread.cpp + + SEARCH_CPPS = qual.cpp pat.cpp ebwt_search_util.cpp ref_aligner.cpp \ + log.cpp hit_set.cpp refmap.cpp annot.cpp sam.cpp \ |